RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SERPINB8P50452 374 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 NR0B1P51843 470 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 ASPHQ12797 758 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 CUL3Q13618 768 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 EMC4Q5J8M3 183 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 MRM1Q6IN84 353 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 DGAT2L6Q6ZPD8 337 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 CEP128Q6ZU80 1094 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 FAM47EQ6ZV65 393 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 GOLGA7Q7Z5G4 137 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 C9orf40Q8IXQ3 194 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 SLC15A4Q8N697 577 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 L3MBTL4Q8NA19 623 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 SLC22A8Q8TCC7 542 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 PPWD1Q96BP3 646 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 FBXL20Q96IG2 436 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 PELOQ9BRX2 385 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 LRRC1Q9BTT6 524 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 ACSS3Q9H6R3 686 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 IPPKQ9H8X2 491 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 IL1RL2Q9HB29 575 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 LYARQ9NX58 379 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 PSD3Q9NYI0 1048 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 NINJ2Q9NZG7 142 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 CPSF2Q9P2I0 782 aaKnown RBP15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 ASB4Q9Y574 426 aa15.32■□□□□ 0.04
CCDC28B-204ENST00000469003 ZFHX3Q15911 3703 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 PHF3Q92576 2039 aaKnown RBP15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 A0A0A6YYD5 115 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 OR14I1A6ND48 311 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 EEDO75530 441 aaKnown RBP15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 PRKRAO75569 313 aaKnown RBP15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 NADKO95544 446 aaPredicted RBP15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 CCL3P10147 92 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 BSGP35613 385 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 DNASE1L1P49184 302 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 FOXO1Q12778 655 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 CPSF6Q16630 551 aaKnown RBP eCLIP15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 HYAL4Q2M3T9 481 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 SPRED3Q2MJR0 410 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 ZNF791Q3KP31 576 aaPredicted RBP15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 TECRLQ5HYJ1 363 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 RELL1Q8IUW5 271 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 ST13P4Q8IZP2 240 aaPredicted RBP15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 FAM109AQ8N4B1 249 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 TMEM251Q8N6I4 163 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 WDR20Q8TBZ3 569 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 RND1Q92730 232 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 C14orf79Q96F83 325 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 TREX2Q9BQ50 279 aaPredicted RBP15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 VPS11Q9H270 941 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 DDX31Q9H8H2 851 aaKnown RBP15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 SH2D2AQ9NP31 389 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 RYDENQ9NUL5 291 aaKnown RBP15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 RNF11Q9Y3C5 154 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 CSMD2Q7Z408 3487 aa15.31■□□□□ 0.04
CCDC28B-204ENST00000469003 A0A1B0GVC2 190 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 NPIPA2E9PIF3 369 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 NPIPA3F8WFD2 350 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 HRKO00198 91 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 FOXE1O00358 373 aaPredicted RBP15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 TMPRSS11DO60235 418 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 DNAJC13O75165 2243 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 SIX3O95343 332 aaPredicted RBP15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 GPR75O95800 540 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 FAM58BPP0C7Q3 252 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 NR2F6P10588 404 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 CHRNB4P30926 498 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 MAGEA5P43359 124 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 TBL3Q12788 808 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 GXYLT1Q4G148 440 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 UBAP2Q5T6F2 1119 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 SLC22A10Q63ZE4 541 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 CYP20A1Q6UW02 462 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 LYPD8Q6UX82 237 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 MEX3BQ6ZN04 569 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 MED13LQ71F56 2210 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 TRILQ7L0X0 811 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 PLD6Q8N2A8 252 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 RPRMLQ8N4K4 120 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 LILRB4Q8NHJ6 448 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 SMC6Q96SB8 1091 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 CNPPD1Q9BV87 410 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 FUT8Q9BYC5 575 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 WDR41Q9HAD4 459 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 TUBA8Q9NY65 449 aaPredicted RBP15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 MTRF1LQ9UGC7 380 aaKnown RBP15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 RNF6Q9Y252 685 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 LIPGQ9Y5X9 500 aa15.3■□□□□ 0.04
CCDC28B-204ENST00000469003 NF1P21359 2839 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 IQANK1A0A1B0GTG1 560 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 A0A1W2PR48 441 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 BCKDKO14874 412 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 OR10H2O60403 315 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 SEMA3DO95025 777 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 CLDN9O95484 217 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 GALNSP34059 522 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 PIGAP37287 484 aa15.29■□□□□ 0.04
CCDC28B-204ENST00000469003 MAGEA12P43365 314 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms