RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ERVH48-1M5A8F1 160 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 TSPAN6O43657 245 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 IFNW1P05000 195 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 ATP1B2P14415 290 aaPredicted RBP11.83□□□□□ -0.52
HDAC4-208ENST00000463007 ETV3P41162 512 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 RAE1P78406 368 aaKnown RBP11.83□□□□□ -0.52
HDAC4-208ENST00000463007 MTAPQ13126 283 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 IL18Q14116 193 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 VEZF1Q14119 521 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 E2F2Q14209 437 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 SEC23BQ15437 767 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 ASB18Q6ZVZ8 466 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 ZNF367Q7RTV3 350 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 OR2A12Q8NGT7 310 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 SORCS1Q8WY21 1168 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 FRMD6Q96NE9 622 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 POLR2J3Q9H1A7 115 aaKnown RBP11.83□□□□□ -0.52
HDAC4-208ENST00000463007 NFKBIL1Q9UBC1 381 aaPredicted RBP11.83□□□□□ -0.52
HDAC4-208ENST00000463007 PLAGL1Q9UM63 463 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 SNX7Q9UNH6 387 aa11.83□□□□□ -0.52
HDAC4-208ENST00000463007 NUP210Q8TEM1 1887 aaPredicted RBP11.82□□□□□ -0.52
HDAC4-208ENST00000463007 LRRK1Q38SD2 2015 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 PLXND1Q9Y4D7 1925 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 A0A0B4J293 547 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 WASHC1A8K0Z3 465 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 TIMP1P01033 207 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 PTPN2P17706 415 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 XPAP23025 273 aaPredicted RBP11.82□□□□□ -0.52
HDAC4-208ENST00000463007 KIR2DL3P43628 341 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 LIM2P55344 173 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 DCDC1P59894 354 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 MAP4K2Q12851 820 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 QPRTQ15274 297 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 P2RY14Q15391 338 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 BTBD16Q32M84 506 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 CEACAM20Q6UY09 585 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 WASH2PQ6VEQ5 465 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 USP45Q70EL2 814 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 L3MBTL4Q8NA19 623 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 C19orf18Q8NEA5 215 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 OR8J2Q8NGG1 315 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 SLC7A6Q92536 515 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 TMEM159Q96B96 161 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 RNF31Q96EP0 1072 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 MRGPRX3Q96LB0 322 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 PIP5K1AQ99755 562 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 WACQ9BTA9 647 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 TMED9Q9BVK6 235 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 HDHD5Q9BXW7 423 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 HCFC1R1Q9NWW0 138 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 MAT2BQ9NZL9 334 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 PADI2Q9Y2J8 665 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 COL4A3Q01955 1670 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 FAM240BA0A1B0GVZ2 78 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 A0A1W2PQ72 361 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 TNFRSF10AO00220 468 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 CSF3P09919 207 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 CTSCP53634 463 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 CNTN1Q12860 1018 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 TATDN3Q17R31 274 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 PDZD3Q86UT5 571 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 KRT73Q86Y46 540 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 OR5H6Q8NGV6 325 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 CRELD1Q96HD1 420 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 UCK2Q9BZX2 261 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 KLK4Q9Y5K2 254 aa11.82□□□□□ -0.52
HDAC4-208ENST00000463007 RGS13O14921 159 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 CASKO14936 926 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 YES1P07947 543 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 GABRB1P18505 474 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 UQCRC1P31930 480 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 GSTM5P46439 218 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 XKP51811 444 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 LRRC32Q14392 662 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 LARS2Q15031 903 aaKnown RBP11.81□□□□□ -0.52
HDAC4-208ENST00000463007 TEAD4Q15561 434 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 ZNF658BQ4V348 819 aaPredicted RBP11.81□□□□□ -0.52
HDAC4-208ENST00000463007 ZDHHC20Q5W0Z9 365 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 TRIQKQ629K1 86 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 COMMD6Q7Z4G1 85 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 SUN5Q8TC36 379 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 KLHL6Q8WZ60 621 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 SLC22A4Q9H015 551 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 TRPC4Q9UBN4 977 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 NDRG2Q9UN36 371 aaKnown RBP11.81□□□□□ -0.52
HDAC4-208ENST00000463007 C2orf92A0A1B0GVN3 265 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 C1orf226A1L170 272 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 B4DXG7 233 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 GRM6O15303 877 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 POP4O95707 220 aaKnown RBP11.81□□□□□ -0.52
HDAC4-208ENST00000463007 LRG1P02750 347 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 MPC1LP0DKB6 136 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 GNG2P59768 71 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 ZNF91Q05481 1191 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 C1DQ13901 141 aaKnown RBP11.81□□□□□ -0.52
HDAC4-208ENST00000463007 PRSS53Q2L4Q9 553 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 CCDC149Q6ZUS6 474 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 GPR155Q7Z3F1 870 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 KLHDC8AQ8IYD2 350 aa11.81□□□□□ -0.52
HDAC4-208ENST00000463007 KREMEN2Q8NCW0 462 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms