RNA–Protein interactions for RNA: ENST00000454952.1

NIF3L1-209, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 5

Gene NIF3L1, Length 719 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-209ENST00000454952 ZNF629Q9UEG4 869 aaPredicted RBP7.4□□□□□ -1.22
NIF3L1-209ENST00000454952 PHF11Q9UIL8 331 aa7.4□□□□□ -1.22
NIF3L1-209ENST00000454952 IKZF3Q9UKT9 509 aa7.4□□□□□ -1.22
NIF3L1-209ENST00000454952 LIPGQ9Y5X9 500 aa7.4□□□□□ -1.22
NIF3L1-209ENST00000454952 TEX264Q9Y6I9 313 aa7.4□□□□□ -1.22
NIF3L1-209ENST00000454952 AKAP9Q99996 3911 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ACANP16112 2415 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 IQANK1A0A1B0GTG1 560 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ANKRD33BA6NCL7 494 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 NCF1BA6NI72 391 aaPredicted RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 OR6C76A6NM76 312 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 NCF1CA8MVU1 366 aaPredicted RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 TP53I11O14683 189 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 LDB3O75112 727 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 CDH16O75309 829 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 BANF1O75531 89 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 IL2RAP01589 272 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 CCL3P10147 92 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 NCF1P14598 390 aaPredicted RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 HIST1H1TP22492 207 aaPredicted RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 CPN2P22792 545 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ATP5A1P25705 553 aaKnown RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 GCKP35557 465 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 TIMP3P35625 211 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ADH7P40394 386 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 CASP2P42575 452 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 GDF5P43026 501 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 MSH2P43246 934 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 SSR2P43308 183 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 TMED10P49755 219 aaKnown RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ARFIP1P53367 373 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 PHEXP78562 749 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 IGLV3-21P80748 117 aaPredicted RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ASPHQ12797 758 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 DOC2AQ14183 400 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 DAZAP2Q15038 168 aaPredicted RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 CEBPEQ15744 281 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 MED27Q6P2C8 311 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 LRRC70Q7Z2Q7 622 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 VN1R5Q7Z5H4 357 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 LIX1LQ8IVB5 337 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ULK2Q8IYT8 1036 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 TAGAPQ8N103 731 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 LRRC25Q8N386 305 aaPredicted RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 PDPRQ8NCN5 879 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 BBOF1Q8ND07 529 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 FAM13CQ8NE31 585 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 NEIL3Q8TAT5 605 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ZNF721Q8TF20 911 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 CDKL2Q92772 493 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 CMTM7Q96FZ5 175 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ZNF597Q96LX8 424 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 F2RL3Q96RI0 385 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 GPATCH1Q9BRR8 931 aaKnown RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 RPF2Q9H7B2 306 aaKnown RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 SH2D2AQ9NP31 389 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ZNF358Q9NW07 568 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 MOCS1Q9NZB8 636 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 CD274Q9NZQ7 290 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 CRIM1Q9NZV1 1036 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 ZNF490Q9ULM2 529 aaPredicted RBP7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 SNX12Q9UMY4 172 aa7.39□□□□□ -1.23
NIF3L1-209ENST00000454952 NF1P21359 2839 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 C15orf38-AP3S2A0A0A6YYH1 394 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 TUBAL3A6NHL2 446 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 FAM171A2A8MVW0 826 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 ZSCAN12O43309 604 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 PROM1O43490 865 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 OR10H2O60403 315 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 SNX4O95219 450 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 ETHE1O95571 254 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 EPPINO95925 133 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 RAF1P04049 648 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 IGKV3-11P04433 115 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 CELA3AP09093 270 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 ALOX15P16050 662 aaPredicted RBP7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 STMN1P16949 149 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 HOXB4P17483 251 aaPredicted RBP7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 TCP1P17987 556 aaKnown RBP7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 BMP5P22003 454 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 GALNSP34059 522 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 PIGAP37287 484 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 BUD31P41223 144 aaPredicted RBP7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 HSPA7P48741 367 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 RAP1GDS1P52306 607 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 PGGT1BP53609 377 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 SORDQ00796 357 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 FOXD4Q12950 439 aaPredicted RBP7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 CHIT1Q13231 466 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 KEAP1Q14145 624 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 ZNF460Q14592 562 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 SPRED3Q2MJR0 410 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 ACSF3Q4G176 576 aaPredicted RBP7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 HP1BP3Q5SSJ5 553 aaPredicted RBP7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 KHDRBS2Q5VWX1 349 aaKnown RBP7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 TMEM198Q66K66 360 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 SCIMPQ6UWF3 145 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 PAMR1Q6UXH9 720 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 RNF111Q6ZNA4 994 aa7.38□□□□□ -1.23
NIF3L1-209ENST00000454952 BIVMQ86UB2 503 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms