RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 ACAD11Q709F0 780 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 CREB3L4Q8TEY5 395 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 SMIM10Q96HG1 83 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 CCDC28BQ9BUN5 200 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 TCF7L2Q9NQB0 619 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 SNX6Q9UNH7 406 aa16.85■□□□□ 0.29
SQSTM1-204ENST00000453046 CPAMD8Q8IZJ3 1885 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 A0A088AWK7 358 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 A0A1B0GUH1 482 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 GABRR3A8MPY1 467 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 H0YIV9 168 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 DCTN3O75935 186 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 STSP08842 583 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 CD22P20273 847 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 ZNF10P21506 573 aaPredicted RBP16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 COL8A1P27658 744 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 GSTM2P28161 218 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 TDGF1P3P51864 188 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 SRSF11Q05519 484 aaKnown RBP16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 DOC2AQ14183 400 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 FJX1Q86VR8 437 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 DDIASQ8IXT1 998 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 CA13Q8N1Q1 262 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 HORMAD2Q8N7B1 307 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 ACTRT2Q8TDY3 377 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 UBE2E3Q969T4 207 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 GAL3ST3Q96A11 431 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 REPS1Q96D71 796 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 EBF4Q9BQW3 602 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 PITHD1Q9GZP4 211 aaPredicted RBP16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 TUBB1Q9H4B7 451 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 ELOVL6Q9H5J4 265 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 CDCP1Q9H5V8 836 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 PRDM9Q9NQV7 894 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 KLHL1Q9NR64 748 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 TIMM22Q9Y584 194 aa16.84■□□□□ 0.29
SQSTM1-204ENST00000453046 A0A0G2JN53 185 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 A8MUA0 341 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 C4orf51C9J302 202 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 FAM227AF5H4B4 570 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 MANBAO00462 879 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 ERI3O43414 337 aaKnown RBP16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 UNC5CO95185 931 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 CD46P15529 392 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 SERPINB3P29508 390 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 CD96P40200 585 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 HTR6P50406 440 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 PMP22Q01453 160 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 RBPJQ06330 500 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 IFT88Q13099 833 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 OR1C1Q15619 314 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 ZRSR2Q15696 482 aaKnown RBP16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 CPSF6Q16630 551 aaKnown RBP eCLIP16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 SLC9B1Q4ZJI4 515 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 TCHHL1Q5QJ38 904 aaPredicted RBP16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 C1QL3Q5VWW1 255 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 FRG2Q64ET8 278 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 RPS19BP1Q86WX3 136 aaKnown RBP16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 ELP5Q8TE02 316 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 SIGLEC12Q96PQ1 595 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 FRG2BQ96QU4 278 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 NPAS2Q99743 824 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 NT5DC2Q9H857 520 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 SEC14L3Q9UDX4 400 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 TSC22D4Q9Y3Q8 395 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 PCDHGB6Q9Y5F9 930 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 PCDHGA11Q9Y5H2 935 aa16.83■□□□□ 0.28
SQSTM1-204ENST00000453046 DIDO1Q9BTC0 2240 aaKnown RBP16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 TRGV8A0A0C4DH27 118 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 TCRBV16S1A1N1A0A5B0 115 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 SERTM1A2A2V5 107 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 SAGE2PA6NJ88 616 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 MAN1A2O60476 641 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 ULK1O75385 1050 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 CLEC3AO75596 197 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 PLA2G16P53816 162 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 HIST2H2ACQ16777 129 aaPredicted RBP16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 HIST2H2AA3Q6FI13 130 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 SPINK14Q6IE38 97 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 MED27Q6P2C8 311 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 TRIM40Q6P9F5 258 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 KIF2BQ8N4N8 673 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 TMEM178AQ8NBL3 297 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 MS4A6EQ96DS6 147 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 RILPQ96NA2 401 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 REXO4Q9GZR2 422 aaKnown RBP16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 AICDAQ9GZX7 198 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 COPS7BQ9H9Q2 264 aaPredicted RBP16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 NECTIN3Q9NQS3 549 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 TRIM33Q9UPN9 1127 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 MMACHCQ9Y4U1 282 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 NOTCH2Q04721 2471 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 UNC79Q9P2D8 2635 aa16.82■□□□□ 0.28
SQSTM1-204ENST00000453046 LRIT2A6NDA9 550 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 CLDN4O14493 209 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 B3GALT2O43825 422 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 ZG16O60844 167 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 HSD3B1P14060 373 aa16.81■□□□□ 0.28
SQSTM1-204ENST00000453046 HSD3B2P26439 372 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms