RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 MKLN1Q9UL63 735 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 NUAK1O60285 661 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 PEPDP12955 493 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 NLGN4YQ8NFZ3 816 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-209ENST00000438120 TMEM234Q8WY98 164 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 LRIG1Q96JA1 1093 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 SECISBP2Q96T21 854 aaKnown RBP16.44■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF350Q9GZX5 532 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 LMO7Q8WWI1 1683 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 C1orf226A1L170 272 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 TP53I11O14683 189 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 PLP2Q04941 152 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 THAP4Q8WY91 577 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF701Q9NV72 531 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-209ENST00000438120 MSX1P28360 303 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 TAS2R43P59537 309 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 TUBA1BP68363 451 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 TUBA4AP68366 448 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 LPAL2Q16609 132 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 LRFN4Q6PJG9 635 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 TUBA1AQ71U36 451 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 LINC00597Q9H2U6 94 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 FANCFQ9NPI8 374 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 CDH10Q9Y6N8 788 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 PIAS3Q9Y6X2 628 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 SEC14L5O43304 696 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 FARS2O95363 451 aaKnown RBP16.44■□□□□ 0.22
PTPRF-209ENST00000438120 PSMA6P60900 246 aaKnown RBP16.44■□□□□ 0.22
PTPRF-209ENST00000438120 LRRTM3Q86VH5 581 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 C7orf43Q8WVR3 580 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 GMEB1Q9Y692 573 aa16.44■□□□□ 0.22
PTPRF-209ENST00000438120 PVALBP20472 110 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-209ENST00000438120 MECP2P51608 486 aaKnown RBP16.43■□□□□ 0.22
PTPRF-209ENST00000438120 SHC2P98077 582 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 MVB12BQ9H7P6 319 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 AIG1Q9NVV5 245 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 EXTL2Q9UBQ6 330 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 PADI2Q9Y2J8 665 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 MON2Q7Z3U7 1717 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 ANHXE9PGG2 379 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF623O75123 536 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 FDXRP22570 491 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 STOMP27105 288 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 FAM189BP81408 668 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 ENPP6Q6UWR7 440 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 SUN5Q8TC36 379 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 NINJ1Q92982 152 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 IL20RAQ9UHF4 553 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 DISC1C4P0D8 188 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 SLC10A3P09131 477 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 EIF2S3P41091 472 aaKnown RBP16.43■□□□□ 0.22
PTPRF-209ENST00000438120 EIF5AP63241 154 aaKnown RBP16.43■□□□□ 0.22
PTPRF-209ENST00000438120 RAB39AQ14964 217 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 ZFP41Q8N8Y5 198 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 DENND6BQ8NEG7 585 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 MAL2Q969L2 176 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 PRR11Q96HE9 360 aaPredicted RBP16.43■□□□□ 0.22
PTPRF-209ENST00000438120 A6NCN8 305 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 CD8B2A6NJW9 211 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 CD8BP10966 210 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 GCGRP47871 477 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 E2F1Q01094 437 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 TUBA3EQ6PEY2 450 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 NR4A3Q92570 626 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 SPINT3P49223 89 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 NEIL3Q8TAT5 605 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 RANBP9Q96S59 729 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 ATG5Q9H1Y0 275 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 MLXQ9UH92 298 aa16.43■□□□□ 0.22
PTPRF-209ENST00000438120 FAAHO00519 579 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 ETFAP13804 333 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 KDELR2P33947 212 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 HK3P52790 923 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 MAMDC4Q6UXC1 1216 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 CEACAM19Q7Z692 300 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 TRIM73Q86UV7 250 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 RELL1Q8IUW5 271 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 CLEC4EQ9ULY5 219 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 M0R036 132 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 LAMTOR5O43504 91 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 PRKCAP17252 672 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 TMEM135Q86UB9 458 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 BOLLQ8N9W6 283 aaKnown RBP16.42■□□□□ 0.22
PTPRF-209ENST00000438120 ADAMTS6Q9UKP5 1117 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 TNFRSF1BP20333 461 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 GID4Q8IVV7 300 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 SLC44A3Q8N4M1 653 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 ZNF431Q8TF32 576 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-209ENST00000438120 NANSQ9NR45 359 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 WASF3Q9UPY6 502 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 RNH1P13489 461 aaKnown RBP16.42■□□□□ 0.22
PTPRF-209ENST00000438120 RPS15AP62244 130 aaKnown RBP16.42■□□□□ 0.22
PTPRF-209ENST00000438120 SH3BP2P78314 561 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 OR4C15Q8NGM1 316 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 C15orf40Q8WUR7 153 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 SLC6A7Q99884 636 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 MROQ9BYG7 248 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 EHD1Q9H4M9 534 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 C14orf119Q9NWQ9 140 aa16.42■□□□□ 0.22
PTPRF-209ENST00000438120 NUP50Q9UKX7 468 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms