RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 MMP11P24347 488 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 ITGA3P26006 1051 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 ASMTP46597 345 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 ARFIP1P53367 373 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 DIO3P55073 304 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 Q0VFX4 171 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 MAPRE2Q15555 327 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 ADPRMQ3LIE5 342 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 RFTN2Q52LD8 501 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-208ENST00000437607 PDCD4Q53EL6 469 aaKnown RBP11.42□□□□□ -0.58
PTPRF-208ENST00000437607 NOXRED1Q6NXP6 359 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 FBXO42Q6P3S6 717 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 TTLL10Q6ZVT0 673 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 OVCH1Q7RTY7 1134 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 OR4N4Q8N0Y3 316 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 DTWD1Q8N5C7 304 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 GRHL3Q8TE85 626 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 CHTF18Q8WVB6 975 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 FKBP10Q96AY3 582 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 MS4A6EQ96DS6 147 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 FCRL1Q96LA6 429 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 NDC1Q9BTX1 674 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 BRINP2Q9C0B6 783 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 SLC26A1Q9H2B4 701 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 ZNF385DQ9H6B1 395 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 SYNPO2LQ9H987 977 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 MCM8Q9UJA3 840 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 ADAM29Q9UKF5 820 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 POLQO75417 2590 aa11.42□□□□□ -0.58
PTPRF-208ENST00000437607 A0A0G2JN53 185 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 RTCAO00442 366 aaKnown RBP11.41□□□□□ -0.58
PTPRF-208ENST00000437607 LRRTM2O43300 516 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 TBX6O95947 436 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-208ENST00000437607 ANXA4P09525 319 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-208ENST00000437607 G6PDP11413 515 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 BCKDHAP12694 445 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 PRF1P14222 555 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 PIK3R1P27986 724 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 ADSLP30566 484 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-208ENST00000437607 HPCAL1P37235 193 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 TSFMP43897 325 aaKnown RBP11.41□□□□□ -0.58
PTPRF-208ENST00000437607 GSTM5P46439 218 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 MRPL19P49406 292 aaKnown RBP11.41□□□□□ -0.58
PTPRF-208ENST00000437607 MAPK12P53778 367 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 CLNS1AP54105 237 aaKnown RBP11.41□□□□□ -0.58
PTPRF-208ENST00000437607 NME5P56597 212 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 RAB8AP61006 207 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 HYAL2Q12891 473 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 GRM7Q14831 915 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 HERC3Q15034 1050 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 HKDC1Q2TB90 917 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 WASHC2DQ5SRD0 308 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 CCNYL2Q5T2Q4 361 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 FAM91A1Q658Y4 838 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 GALNT18Q6P9A2 607 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 ABHD17CQ6PCB6 329 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 KIRREL2Q6UWL6 708 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 SHISA6Q6ZSJ9 500 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 CPSF7Q8N684 471 aaKnown RBP11.41□□□□□ -0.58
PTPRF-208ENST00000437607 KCT2Q8NC54 265 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 CLHC1Q8NHS4 586 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 NACC2Q96BF6 587 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 TM4SF19Q96DZ7 209 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 TSSK3Q96PN8 268 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 MACROD1Q9BQ69 325 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 TBCDQ9BTW9 1192 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 DPY30Q9C005 99 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 WDR54Q9H977 334 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 SDR39U1Q9NRG7 319 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-208ENST00000437607 ENAMQ9NRM1 1142 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 AGPAT4Q9NRZ5 378 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 SIRT5Q9NXA8 310 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 ZIM2Q9NZV7 527 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 MAPRE3Q9UPY8 281 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 OSGIN2Q9Y236 505 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 DLGAP4Q9Y2H0 992 aa11.41□□□□□ -0.58
PTPRF-208ENST00000437607 A0A1B0GX78 115 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 CCT8L1PA6NM43 557 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 C4orf51C9J302 202 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 PSMD12O00232 456 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-208ENST00000437607 NR5A2O00482 541 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 DSCR3O14972 297 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 MED26O95402 600 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 ALBP02768 609 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 KLK1P06870 262 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 EDN3P14138 238 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 ALOX12P18054 663 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 IL1RNP18510 177 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 HIST1H1TP22492 207 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-208ENST00000437607 JAK1P23458 1154 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 CERS1P27544 350 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 BSGP35613 385 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 MTTPP55157 894 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 KCNK10P57789 538 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 KLF10Q13118 480 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 PTGR1Q14914 329 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 KIAA0040Q15053 153 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 MUM1Q2TAK8 710 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 PRTGQ2VWP7 1150 aa11.4□□□□□ -0.58
PTPRF-208ENST00000437607 AGKQ53H12 422 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms