RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 GPR1P46091 355 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 XKP51811 444 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 SMSP52788 366 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 RPS25P62851 125 aaKnown RBP8.23□□□□□ -1.09
USP40-203ENST00000427112 CSTF1Q05048 431 aaKnown RBP8.23□□□□□ -1.09
USP40-203ENST00000427112 P2RY14Q15391 338 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 MICAQ29983 383 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 FAM27D1Q5T7N8 215 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 SERPINA11Q86U17 422 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 FAM129CQ86XR2 697 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 SYNPOQ8N3V7 929 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 SIMC1Q8NDZ2 872 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 KBTBD8Q8NFY9 601 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 C16orf78Q8WTQ4 265 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 HMGB4Q8WW32 186 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 ORAI1Q96D31 301 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 C16orf58Q96GQ5 468 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 PDLIM5Q96HC4 596 aaKnown RBP8.23□□□□□ -1.09
USP40-203ENST00000427112 C8orf4Q9NR00 106 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 MAN2B2Q9Y2E5 1009 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 PCDHGA2Q9Y5H1 932 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 TRAV6A0A075B6T7 132 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 PIPSLA2A3N6 862 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 H3BQ06 376 aaPredicted RBP8.23□□□□□ -1.09
USP40-203ENST00000427112 H7C0S8 307 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 TGM5O43548 720 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 OR1F1O43749 312 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 B3GALNT1O75752 331 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 GPR4P46093 362 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 CRISP1P54107 249 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 ABATP80404 500 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 IL18Q14116 193 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 CDKN3Q16667 212 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 SLC30A6Q6NXT4 461 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 KRT74Q7RTS7 529 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 CCDC116Q8IYX3 515 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 KCT2Q8NC54 265 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 BEST4Q8NFU0 473 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 OR51L1Q8NGJ5 315 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 OR2A12Q8NGT7 310 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 ZSWIM3Q96MP5 696 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 MMP27Q9H306 513 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 IMP3Q9NV31 184 aaKnown RBP8.23□□□□□ -1.09
USP40-203ENST00000427112 TBC1D24Q9ULP9 559 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 SCN5AQ14524 2016 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 CASKO14936 926 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 SMAD9O15198 467 aaKnown RBP8.23□□□□□ -1.09
USP40-203ENST00000427112 DYRK3O43781 588 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 SEMA7AO75326 666 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 CSO75390 466 aaKnown RBP8.23□□□□□ -1.09
USP40-203ENST00000427112 TOXO94900 526 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 PCCBP05166 539 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 HBQ1P09105 142 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 ALOX5P09917 674 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 FOSL2P15408 326 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 CELP19835 753 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 MAPK12P53778 367 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 KEAP1Q14145 624 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 GINS1Q14691 196 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 GPR19Q15760 415 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 FXNQ16595 210 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 KLHL12Q53G59 568 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 FRMPD2BQ6IN97 320 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 ACSM5Q6NUN0 579 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 LRRC70Q7Z2Q7 622 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 SLC38A5Q8WUX1 472 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 VMP1Q96GC9 406 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 SDHCQ99643 169 aaPredicted RBP8.23□□□□□ -1.09
USP40-203ENST00000427112 GPA33Q99795 319 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 NLNQ9BYT8 704 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 HDHD2Q9H0R4 259 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 MAGIXQ9H6Y5 334 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 PLEKHM1Q9Y4G2 1056 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 OR1A2Q9Y585 309 aa8.23□□□□□ -1.09
USP40-203ENST00000427112 ZNF860A6NHJ4 632 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 HAT1O14929 419 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 NUAK1O60285 661 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 POP7O75817 140 aaKnown RBP8.22□□□□□ -1.09
USP40-203ENST00000427112 DSTNP60981 165 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 RPS7P62081 194 aaKnown RBP8.22□□□□□ -1.09
USP40-203ENST00000427112 TUBA1BP68363 451 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 SPHARQ15513 63 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 DCST1Q5T197 706 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 ZC3H14Q6PJT7 736 aaKnown RBP8.22□□□□□ -1.09
USP40-203ENST00000427112 TUBA1AQ71U36 451 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 MMAAQ8IVH4 418 aaKnown RBP8.22□□□□□ -1.09
USP40-203ENST00000427112 OR6C4Q8NGE1 309 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 GANCQ8TET4 914 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 PLA2G12AQ9BZM1 189 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 C11orf54Q9H0W9 315 aaPredicted RBP8.22□□□□□ -1.09
USP40-203ENST00000427112 CCNB1IP1Q9NPC3 277 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 HCN4Q9Y3Q4 1203 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 KCNE3Q9Y6H6 103 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 CSNK1G3Q9Y6M4 447 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 A0A0B4J203 849 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 PSMD9O00233 223 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 HPGDSO60760 199 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 C8GP07360 202 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 JUNDP17535 347 aa8.22□□□□□ -1.09
USP40-203ENST00000427112 CBLP22681 906 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms