RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 RABL2AQ9UBK7 228 aaPredicted RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 TRPV2Q9Y5S1 764 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 KIAA1671Q9BY89 1806 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 C7orf66A4D0T2 115 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 ATP6V1G2-DDX39BF2Z307 99 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 PRKYO43930 277 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 PSIP1O75475 530 aaKnown RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 RRASP10301 218 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 GABRA5P31644 462 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 AVPR1BP47901 424 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 CTBP2P56545 445 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 PFN3P60673 137 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 GPR176Q14439 515 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 CHRNA6Q15825 494 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 LYPLAL1Q5VWZ2 237 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 KIAA1324Q6UXG2 1013 aaKnown RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 FAM26EQ8N5C1 309 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 ZNF655Q8N720 491 aaPredicted RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 OR4K1Q8NGD4 311 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 NPLOC4Q8TAT6 608 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 PMEPA1Q969W9 287 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 PKP4Q99569 1192 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 MED28Q9H204 178 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 GHITMQ9H3K2 345 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 RC3H2Q9HBD1 1191 aaKnown RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 ZSCAN32Q9NX65 697 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 FBXO9Q9UK97 447 aaPredicted RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 ACSL6Q9UKU0 697 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 GSTK1Q9Y2Q3 226 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 GLYATL1P3A0A0U1RQE8 302 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 H3BN98 237 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 M0QZ92 97 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 CASKO14936 926 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 ZNF623O75123 536 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 SEMA7AO75326 666 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 CLDN11O75508 207 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 OAZ2O95190 189 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 SOD1P00441 154 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 IFNA14P01570 189 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 TP53P04637 393 aaPredicted RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 ANXA4P09525 319 aaPredicted RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 CTSHP09668 335 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 ICAM2P13598 275 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 INPP1P49441 399 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 DDX39BQ13838 428 aaKnown RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 EXOSC2Q13868 293 aaKnown RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 GRB14Q14449 540 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 ZNF284Q2VY69 593 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 SYT14P1Q58G82 188 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 C3orf38Q5JPI3 329 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 ATXN7L2Q5T6C5 722 aaPredicted RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 LIPJQ5W064 366 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 ZNF57Q68EA5 555 aaPredicted RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 TYW3Q6IPR3 259 aaKnown RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 ADGRG3Q86Y34 549 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 NXPE1Q8N323 547 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 OXR1Q8N573 874 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 CELF5Q8N6W0 485 aaKnown RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 LRRC17Q8N6Y2 441 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 ATAD1Q8NBU5 361 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 ASB11Q8WXH4 323 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 FGF11Q92914 225 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 SCMH1Q96GD3 660 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 METTL2AQ96IZ6 378 aaKnown RBP10.18□□□□□ -0.78
USP54-204ENST00000422491 UROC1Q96N76 676 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 P2RY13Q9BPV8 354 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 PTTG3PQ9NZH4 202 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 MGAT4BQ9UQ53 548 aa10.18□□□□□ -0.78
USP54-204ENST00000422491 SHISA3A0PJX4 238 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 B4GALT3O60512 393 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 MPC2O95563 127 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 C8GP07360 202 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 ELAVL4P26378 380 aaKnown RBP10.17□□□□□ -0.78
USP54-204ENST00000422491 BEX3Q00994 111 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 IRF8Q02556 426 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 LRRC74AQ0VAA2 488 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 BAMBIQ13145 260 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 DSG2Q14126 1118 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 SNAPC1Q16533 368 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 ZNF630Q2M218 657 aaPredicted RBP10.17□□□□□ -0.78
USP54-204ENST00000422491 SLC25A30Q5SVS4 291 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 BCL2L15Q5TBC7 163 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 ADNP2Q6IQ32 1131 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 GPR142Q7Z601 462 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 PCNPQ8WW12 178 aaKnown RBP10.17□□□□□ -0.78
USP54-204ENST00000422491 MYO19Q96H55 970 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 TMEM121BQ9BXQ6 578 aaPredicted RBP10.17□□□□□ -0.78
USP54-204ENST00000422491 ATG10Q9H0Y0 220 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 ISYNA1Q9NPH2 558 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 UCKL1Q9NWZ5 548 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 KLHL42Q9P2K6 505 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 RAB23Q9ULC3 237 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 SCML1Q9UN30 329 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 ASB4Q9Y574 426 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 TRDV1A0A1B0GX56 115 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 TMEM129A0AVI4 362 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 TLX2O43763 284 aaPredicted RBP10.17□□□□□ -0.78
USP54-204ENST00000422491 UGDHO60701 494 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 NCR1O76036 304 aa10.17□□□□□ -0.78
USP54-204ENST00000422491 CLDN7O95471 211 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms