RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 SLC48A1Q6P1K1 146 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 DGAT2L6Q6ZPD8 337 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 LINC00696Q6ZRV3 163 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 PTRH1Q86Y79 214 aaKnown RBP11.65□□□□□ -0.54
SKA1-203ENST00000417656 B3GNT7Q8NFL0 401 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 OR14A16Q8NHC5 309 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 RAB3IL1Q8TBN0 382 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 DOK4Q8TEW6 326 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 PTPMT1Q8WUK0 201 aaPredicted RBP11.65□□□□□ -0.54
SKA1-203ENST00000417656 NCLNQ969V3 563 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 PPWD1Q96BP3 646 aaKnown RBP11.65□□□□□ -0.54
SKA1-203ENST00000417656 KLHL29Q96CT2 875 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 C19orf60Q96EN9 201 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 PPP1R36Q96LQ0 422 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 C3orf30Q96M34 536 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 AGAP4Q96P64 663 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 ILKAPQ9H0C8 392 aaPredicted RBP11.65□□□□□ -0.54
SKA1-203ENST00000417656 ZBTB20Q9HC78 741 aaPredicted RBP11.65□□□□□ -0.54
SKA1-203ENST00000417656 VTI1BQ9UEU0 232 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 HAO1Q9UJM8 370 aa11.65□□□□□ -0.54
SKA1-203ENST00000417656 ZNF223Q9UK11 482 aaPredicted RBP11.65□□□□□ -0.54
SKA1-203ENST00000417656 TLN1Q9Y490 2541 aaKnown RBP11.64□□□□□ -0.55
SKA1-203ENST00000417656 BOD1L1Q8NFC6 3051 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 A8MUI8 341 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 OR10H2O60403 315 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 KLHL41O60662 606 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 SNNO75324 88 aaPredicted RBP11.64□□□□□ -0.55
SKA1-203ENST00000417656 SNUPNO95149 360 aaKnown RBP11.64□□□□□ -0.55
SKA1-203ENST00000417656 COX7A2P14406 83 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 TNNI3P19429 210 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 TACR1P25103 407 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 PIK3R1P27986 724 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 RPL14P50914 215 aaKnown RBP11.64□□□□□ -0.55
SKA1-203ENST00000417656 PPP2R2AP63151 447 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 MFAP5Q13361 173 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 KIAA0040Q15053 153 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 ATG16L1Q676U5 607 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 NOXRED1Q6NXP6 359 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 FAM180BQ6P0A1 224 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 ISLR2Q6UXK2 745 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 TRIM42Q8IWZ5 723 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 HOMEZQ8IX15 550 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 ST13P4Q8IZP2 240 aaPredicted RBP11.64□□□□□ -0.55
SKA1-203ENST00000417656 TMEM132CQ8N3T6 1108 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 ZNF321PQ8N8H1 164 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 APCDD1LQ8NCL9 501 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 OR4K14Q8NGD5 310 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 FAM76AQ8TAV0 307 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 SLC2A12Q8TD20 617 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 ELP5Q8TE02 316 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 VMP1Q96GC9 406 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 FCRL1Q96LA6 429 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 PELOQ9BRX2 385 aaKnown RBP11.64□□□□□ -0.55
SKA1-203ENST00000417656 OR8D2Q9GZM6 311 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 MANSC1Q9H8J5 431 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 MYNNQ9NPC7 610 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 PNPOQ9NVS9 261 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 MARCOQ9UEW3 520 aaPredicted RBP11.64□□□□□ -0.55
SKA1-203ENST00000417656 CES1P1Q9UKY3 287 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.64□□□□□ -0.55
SKA1-203ENST00000417656 PCDHGB7Q9Y5F8 929 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 CLCA3PQ9Y6N3 262 aa11.64□□□□□ -0.55
SKA1-203ENST00000417656 HRKO00198 91 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 MAN1A2O60476 641 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 PEX11AO75192 247 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 ERAL1O75616 437 aaKnown RBP11.63□□□□□ -0.55
SKA1-203ENST00000417656 DDAH2O95865 285 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 SDC1P18827 310 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 PTGER1P34995 402 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 GSTM5P46439 218 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 GPR143P51810 404 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 HK2P52789 917 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 OCRLQ01968 901 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 DUSP2Q05923 314 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 NADK2Q4G0N4 442 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 ATP6AP1LQ52LC2 224 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 RFTN2Q52LD8 501 aaPredicted RBP11.63□□□□□ -0.55
SKA1-203ENST00000417656 FAM71E1Q6IPT2 247 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 CRLF3Q8IUI8 442 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 ZNF843Q8N446 348 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 CLHC1Q8NHS4 586 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 DAZLQ92904 295 aaKnown RBP11.63□□□□□ -0.55
SKA1-203ENST00000417656 EXOSC8Q96B26 276 aaKnown RBP11.63□□□□□ -0.55
SKA1-203ENST00000417656 TUBGCP3Q96CW5 907 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 METTL2AQ96IZ6 378 aaKnown RBP11.63□□□□□ -0.55
SKA1-203ENST00000417656 PPP3R2Q96LZ3 170 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 TSSK3Q96PN8 268 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 NPAS2Q99743 824 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 CCT7Q99832 543 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 C1orf50Q9BV19 199 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 CNPPD1Q9BV87 410 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 EPS8L2Q9H6S3 715 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 PFDN4Q9NQP4 134 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 THAP1Q9NVV9 213 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 LUZP4Q9P127 313 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 UTS2RQ9UKP6 389 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 PPIEQ9UNP9 301 aaKnown RBP11.63□□□□□ -0.55
SKA1-203ENST00000417656 CSAG2Q9Y5P2 127 aa11.63□□□□□ -0.55
SKA1-203ENST00000417656 KLF11O14901 512 aa11.62□□□□□ -0.55
SKA1-203ENST00000417656 PRKNO60260 465 aaPredicted RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms