RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 LRRC25Q8N386 305 aaPredicted RBP13.38□□□□□ -0.27
SKA1-202ENST00000398452 DPP10Q8N608 796 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 BMPERQ8N8U9 685 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 ZCCHC14Q8WYQ9 949 aaKnown RBP13.38□□□□□ -0.27
SKA1-202ENST00000398452 GATA6Q92908 595 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 LRRC58Q96CX6 371 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 RAB3IPQ96QF0 476 aaPredicted RBP13.38□□□□□ -0.27
SKA1-202ENST00000398452 CSF3RQ99062 836 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 PELOQ9BRX2 385 aaKnown RBP13.38□□□□□ -0.27
SKA1-202ENST00000398452 RBCK1Q9BYM8 510 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 ACSS1Q9NUB1 689 aaPredicted RBP13.38□□□□□ -0.27
SKA1-202ENST00000398452 C14orf105Q9NVL8 296 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 C5AR2Q9P296 337 aa13.38□□□□□ -0.27
SKA1-202ENST00000398452 A0A096LPI6 279 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 EVPLLA8MZ36 301 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 MEN1O00255 615 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 FBP2O00757 339 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 PGRMC2O15173 223 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 DYRK3O43781 588 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 CTNSO60931 367 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 PRKRAO75569 313 aaKnown RBP13.37□□□□□ -0.27
SKA1-202ENST00000398452 MED26O95402 600 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 STAMBPO95630 424 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 GPR75O95800 540 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 C6orf47O95873 294 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 PPIBP23284 216 aaKnown RBP13.37□□□□□ -0.27
SKA1-202ENST00000398452 ZFP36L2P47974 494 aaKnown RBP13.37□□□□□ -0.27
SKA1-202ENST00000398452 CLDN6P56747 220 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 HSD17B7P56937 341 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 PSME3P61289 254 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 NCALDP61601 193 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 SLC25A3Q00325 362 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 TARDBPQ13148 414 aaKnown RBP eCLIP13.37□□□□□ -0.27
SKA1-202ENST00000398452 SERTAD2Q14140 314 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 SYT16Q17RD7 645 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 ZNF385BQ569K4 471 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 PAGE3Q5JUK9 113 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 BHLHB9Q6PI77 547 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 ANGPTL8Q6UXH0 198 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 DNAJC14Q6Y2X3 702 aaPredicted RBP13.37□□□□□ -0.27
SKA1-202ENST00000398452 RINLQ6ZS11 566 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 DEFB107AQ8IZN7 70 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 MMP21Q8N119 569 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 RBM15BQ8NDT2 890 aaKnown RBP13.37□□□□□ -0.27
SKA1-202ENST00000398452 DNAJB14Q8TBM8 379 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 GTF2H4Q92759 462 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 MR1Q95460 341 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 CIDECQ96AQ7 238 aaPredicted RBP13.37□□□□□ -0.27
SKA1-202ENST00000398452 MIEF2Q96C03 454 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 RBM18Q96H35 190 aaKnown RBP13.37□□□□□ -0.27
SKA1-202ENST00000398452 LRFN5Q96NI6 719 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 CCDC115Q96NT0 180 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 RAD21L1Q9H4I0 556 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 SPAG4Q9NPE6 437 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 TAS2R9Q9NYW1 312 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 ADA2Q9NZK5 511 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 CORO2BQ9UQ03 480 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 EXO1Q9UQ84 846 aaKnown RBP13.37□□□□□ -0.27
SKA1-202ENST00000398452 AP3M1Q9Y2T2 418 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 MSRB2Q9Y3D2 182 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 MMACHCQ9Y4U1 282 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 NEUROG3Q9Y4Z2 214 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 SNX8Q9Y5X2 465 aa13.37□□□□□ -0.27
SKA1-202ENST00000398452 FAM227AF5H4B4 570 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 CYR61O00622 381 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 CDC123O75794 336 aaPredicted RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 DNAJC8O75937 253 aaPredicted RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 DKK1O94907 266 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 TIAF1O95411 115 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 IFNA16P05015 189 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 C8orf89P0DMQ9 161 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 PORP16435 677 aaPredicted RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 ITGAXP20702 1163 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 EFNA1P20827 205 aaPredicted RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 NT5EP21589 574 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 RBMS1P29558 406 aaKnown RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 CHI3L1P36222 383 aaPredicted RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 FEN1P39748 380 aaKnown RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 GCGRP47871 477 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 FOLH1Q04609 750 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 HSPB3Q12988 150 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 MLIPQ5VWP3 458 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 BNC2Q6ZN30 1099 aaPredicted RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 SZRD1Q7Z422 152 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 RETREG3Q86VR2 466 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 MARCH9Q86YJ5 346 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 CCDC116Q8IYX3 515 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 CLECL1Q8IZS7 167 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 DTWD1Q8N5C7 304 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 NUDT8Q8WV74 236 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 ADAMTS14Q8WXS8 1223 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 PTCHD1Q96NR3 888 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 DGAT2Q96PD7 388 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 CGREF1Q99674 301 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 THUMPD3Q9BV44 507 aaKnown RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 LRMDAQ9H2I8 198 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 MMADHCQ9H3L0 296 aaPredicted RBP13.36□□□□□ -0.27
SKA1-202ENST00000398452 C3orf14Q9HBI5 128 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 TAS2R1Q9NYW7 299 aa13.36□□□□□ -0.27
SKA1-202ENST00000398452 NXT1Q9UKK6 140 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms