RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NIFKQ9BYG3 293 aaKnown RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 QRSL1Q9H0R6 528 aaKnown RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 OR51E2Q9H255 320 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 ADAM7Q9H2U9 754 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 PCDHGA7Q9Y5G6 932 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 ADGRB2O60241 1585 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 COL1A2P08123 1366 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 SMIM35A0A1B0GVV1 85 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 ANKRD33BA6NCL7 494 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 AIPO00170 330 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 TGM6O95932 706 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 UQCRC2P22695 453 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 ETV4P43268 484 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 FAM86B1Q8N7N1 296 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 SNX27Q96L92 541 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 DPH2Q9BQC3 489 aaPredicted RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 SERINC1Q9NRX5 453 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 TAC3Q9UHF0 121 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 B3GNT3Q9Y2A9 372 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 C1orf167Q5SNV9 1468 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 A0A0U1RQK1 487 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 HYKKA2RU49 373 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 FANCGO15287 622 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 OR12D1P0DN82 309 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 CTHP32929 405 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 DBPQ10586 325 aaPredicted RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 PUS10Q3MIT2 529 aaKnown RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 BCL7AQ4VC05 210 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 DCST2Q5T1A1 773 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 SMYD5Q6GMV2 418 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 NOXRED1Q6NXP6 359 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 HACD2Q6Y1H2 254 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 CLDN19Q8N6F1 224 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 DENND1AQ8TEH3 1009 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 FCRL3Q96P31 734 aaPredicted RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 REEP4Q9H6H4 257 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 INTS6Q9UL03 887 aaKnown RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 PCDHB11Q9Y5F2 797 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 PCDHA2Q9Y5H9 948 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 MEGF6O75095 1541 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 M0R2N6 131 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 FHP07954 510 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 ALPPL2P10696 532 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 SLC10A6Q3KNW5 377 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 RNASE10Q5GAN6 216 aaKnown RBP11.37□□□□□ -0.59
SYNPO-202ENST00000394243 SPARTQ8N0X7 666 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 ACBD7Q8N6N7 88 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 SLC41A3Q96GZ6 507 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 MSLNLQ96KJ4 702 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 SYNPO2LQ9H987 977 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 WASF3Q9UPY6 502 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 GRPRP30550 384 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 HSD17B2P37059 387 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 SOX3P41225 446 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF763Q0D2J5 394 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 NIPAL4Q0D2K0 466 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 VGLL4Q14135 290 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 PTPRCAPQ14761 206 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 PCGF3Q3KNV8 242 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 HMGN2P46Q86SG4 172 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 PPTC7Q8NI37 304 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 ADAMTS19Q8TE59 1207 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF416Q9BWM5 594 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 NELFAQ9H3P2 528 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 DPEP2Q9H4A9 486 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 BCAS3Q9H6U6 928 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 DEC1Q9P2X7 70 aa11.37□□□□□ -0.59
SYNPO-202ENST00000394243 RAB19A4D1S5 217 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 RHCEP18577 417 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 RAB4AP20338 218 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 TGM4P49221 684 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PRKCZQ05513 592 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 RAB41Q5JT25 222 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 HES5Q5TA89 166 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 C1orf94Q6P1W5 598 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 SVBPQ8N300 66 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 GLYATL2Q8WU03 294 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 MYLIPQ8WY64 445 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 NT5C3BQ969T7 300 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF382Q96SR6 550 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 KLF15Q9UIH9 416 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 COPS3Q9UNS2 423 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 LOC102723532A0A0G2JNH3 316 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF850A8MQ14 1090 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 TREHO43280 583 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 OAS1P00973 400 aaKnown RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 T-ENOLP0DO92 83 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 ATP1B2P14415 290 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 CASP3P42574 277 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF792Q3KQV3 632 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 TECRLQ5HYJ1 363 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 MAP1SQ66K74 1059 aaPredicted RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 PHOSPHO1Q8TCT1 267 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 FAM83CQ9BQN1 747 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 POLDIP3Q9BY77 421 aaKnown RBP11.36□□□□□ -0.59
SYNPO-202ENST00000394243 KCNS2Q9ULS6 477 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 KIAA1210Q9ULL0 1709 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 DIP2AQ14689 1571 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 TRAPPC13A5PLN9 417 aa11.36□□□□□ -0.59
SYNPO-202ENST00000394243 UNC119BA6NIH7 251 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms