RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 RFPL4BQ6ZWI9 263 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 GPR32P1Q8NGA4 272 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 HCAR2Q8TDS4 363 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 TMEM175Q9BSA9 504 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 RERGLQ9H628 205 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 YIPF1Q9Y548 306 aa20.1■□□□□ 0.81
UPF3A-202ENST00000375299 DOCK6Q96HP0 2047 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 AGRPO00253 132 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 SEMA7AO75326 666 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 HLA-DQB1P01920 261 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 C1QBP02746 253 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 ETV5P41161 510 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 CTSOP43234 321 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-202ENST00000375299 ETV1P50549 477 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 TAS2R50P59544 299 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 FAM214AQ32MH5 1076 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 TMIGD1Q6UXZ0 262 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 CELF5Q8N6W0 485 aaKnown RBP20.09■□□□□ 0.81
UPF3A-202ENST00000375299 SUN5Q8TC36 379 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 TTC9Q92623 222 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 SNAPC3Q92966 411 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 PDXPQ96GD0 296 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 KATNB1Q9BVA0 655 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 ZDHHC6Q9H6R6 413 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 STARD7Q9NQZ5 370 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 TOR4AQ9NXH8 423 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 TVP23BQ9NYZ1 205 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 YARS2Q9Y2Z4 477 aaKnown RBP20.09■□□□□ 0.81
UPF3A-202ENST00000375299 STK25O00506 426 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 ZNF197O14709 1029 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 PROM1O43490 865 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 H1F0P07305 194 aaKnown RBP20.09■□□□□ 0.81
UPF3A-202ENST00000375299 CHRM5P08912 532 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-202ENST00000375299 TRIQKQ629K1 86 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 TCTN3Q6NUS6 607 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 UNC5DQ6UXZ4 953 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 LAPTM4BQ86VI4 370 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 NPAS4Q8IUM7 802 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 ARL14EPQ8N8R7 260 aaPredicted RBP20.09■□□□□ 0.81
UPF3A-202ENST00000375299 SCAMP4Q969E2 229 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 MTERF3Q96E29 417 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 DMRT3Q9NQL9 472 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 CARD8Q9Y2G2 431 aa20.09■□□□□ 0.81
UPF3A-202ENST00000375299 SMIM30A4D0T7 59 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 C5orf58C9J3I9 102 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 FOXE1O00358 373 aaPredicted RBP20.08■□□□□ 0.81
UPF3A-202ENST00000375299 PRKYO43930 277 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 KLHL18O94889 574 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 TGFB1P01137 390 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 UQCRC2P22695 453 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 PREPP48147 710 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 DGKGP49619 791 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 RPS25P62851 125 aaKnown RBP20.08■□□□□ 0.81
UPF3A-202ENST00000375299 TCTN1Q2MV58 587 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 PLK5Q496M5 336 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 ZNF730Q6ZMV8 503 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 TMEM150AQ86TG1 271 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 IQCF1Q8N6M8 205 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 C19orf18Q8NEA5 215 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 DEDD2Q8WXF8 326 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 TMEM159Q96B96 161 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 TEFMQ96QE5 360 aaKnown RBP20.08■□□□□ 0.81
UPF3A-202ENST00000375299 NLNQ9BYT8 704 aa20.08■□□□□ 0.81
UPF3A-202ENST00000375299 RBFOX1Q9NWB1 397 aaKnown RBP20.08■□□□□ 0.81
UPF3A-202ENST00000375299 TESQ9UGI8 421 aaKnown RBP20.08■□□□□ 0.81
UPF3A-202ENST00000375299 NPC1O15118 1278 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 TLX2O43763 284 aaPredicted RBP20.08■□□□□ 0.8
UPF3A-202ENST00000375299 TP53P04637 393 aaPredicted RBP20.08■□□□□ 0.8
UPF3A-202ENST00000375299 BCHEP06276 602 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 SLC2A2P11168 524 aaPredicted RBP20.08■□□□□ 0.8
UPF3A-202ENST00000375299 PSKH1P11801 424 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 APEX1P27695 318 aaKnown RBP20.08■□□□□ 0.8
UPF3A-202ENST00000375299 HOXD11P31277 338 aaPredicted RBP20.08■□□□□ 0.8
UPF3A-202ENST00000375299 MAN2A2P49641 1150 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 PPP3R1P63098 170 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 SLBPQ14493 270 aaKnown RBP eCLIP20.08■□□□□ 0.8
UPF3A-202ENST00000375299 IER5LQ5T953 404 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 C22orf39Q6P5X5 142 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 GLCCI1Q86VQ1 547 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 CRIPAKQ8N1N5 446 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 FAM26EQ8N5C1 309 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 SYT14Q8NB59 555 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 CITED4Q96RK1 184 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 POLDIP3Q9BY77 421 aaKnown RBP20.08■□□□□ 0.8
UPF3A-202ENST00000375299 OR51B5Q9H339 312 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 CXorf36Q9H7Y0 433 aa20.08■□□□□ 0.8
UPF3A-202ENST00000375299 WNT4P56705 351 aa20.07■□□□□ 0.8
UPF3A-202ENST00000375299 CYP4F8P98187 520 aa20.07■□□□□ 0.8
UPF3A-202ENST00000375299 MZT2BQ6NZ67 158 aa20.07■□□□□ 0.8
UPF3A-202ENST00000375299 DEF8Q6ZN54 512 aa20.07■□□□□ 0.8
UPF3A-202ENST00000375299 PDZD3Q86UT5 571 aa20.07■□□□□ 0.8
UPF3A-202ENST00000375299 DUSP18Q8NEJ0 188 aa20.07■□□□□ 0.8
UPF3A-202ENST00000375299 MRPL9Q9BYD2 267 aaKnown RBP20.07■□□□□ 0.8
UPF3A-202ENST00000375299 SF3B6Q9Y3B4 125 aaKnown RBP20.07■□□□□ 0.8
UPF3A-202ENST00000375299 BACE2Q9Y5Z0 518 aa20.07■□□□□ 0.8
UPF3A-202ENST00000375299 TSPAN6O43657 245 aa20.07■□□□□ 0.8
UPF3A-202ENST00000375299 ICMTO60725 284 aa20.07■□□□□ 0.8
UPF3A-202ENST00000375299 TNNI3P19429 210 aa20.07■□□□□ 0.8
UPF3A-202ENST00000375299 ATN1P54259 1190 aaPredicted RBP20.07■□□□□ 0.8
UPF3A-202ENST00000375299 TARDBPQ13148 414 aaKnown RBP eCLIP20.07■□□□□ 0.88e-6■□□□□ 10.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms