RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TRIM43Q96BQ3 446 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-203ENST00000372407 LRR1Q96L50 414 aa10.95□□□□□ -0.66
PTPRF-203ENST00000372407 DPH2Q9BQC3 489 aaPredicted RBP10.95□□□□□ -0.66
PTPRF-203ENST00000372407 PDLIM7Q9NR12 457 aa10.95□□□□□ -0.66
PTPRF-203ENST00000372407 ARMC1Q9NVT9 282 aa10.95□□□□□ -0.66
PTPRF-203ENST00000372407 C13orf42A0A1B0GVH6 325 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 FOXD2O60548 495 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 CNMDO75829 334 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 OXSR1O95747 527 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PRLP01236 227 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ZNF865P0CJ78 1059 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 TYRP1P17643 537 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 POLR2CP19387 275 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PPP5CP53041 499 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 HSD17B12Q53GQ0 312 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 GLT8D1Q68CQ7 371 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SPATC1Q76KD6 591 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 DRAXINQ8NBI3 349 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 NUP43Q8NFH3 380 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 OR6N2Q8NGY6 317 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SUN3Q8TAQ9 357 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 CPNE2Q96FN4 548 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 POLDIP3Q9BY77 421 aaKnown RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ZNF700Q9H0M5 742 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SMURF1Q9HCE7 757 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 CD93Q9NPY3 652 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 HRASLS2Q9NWW9 162 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 KLRF1Q9NZS2 232 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PRODH2Q9UF12 536 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ADAMTS5Q9UNA0 930 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PPM1BO75688 479 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SOX30O94993 753 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 OAZ2O95190 189 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 FCER2P06734 321 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 HCKP08631 526 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 S1PR1P21453 382 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 GNG2P59768 71 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ERVPABLB-1P60509 514 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 EOGTQ5NDL2 527 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 KANK2Q63ZY3 851 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SLC25A25Q6KCM7 469 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PHC2Q8IXK0 858 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SLC44A3Q8N4M1 653 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 C7orf57Q8NEG2 295 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ZNF689Q96CS4 500 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PGAP3Q96FM1 320 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 F2RL3Q96RI0 385 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 FAM83CQ9BQN1 747 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 MCOLN1Q9GZU1 580 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 C14orf119Q9NWQ9 140 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PLEKHA6Q9Y2H5 1048 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 C1orf226A1L170 272 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 CPED1A4D0V7 1026 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ZNF860A6NHJ4 632 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 DISC1C4P0D8 188 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PIM1P11309 404 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ANXA3P12429 323 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 CD97P48960 835 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 MLLT10P55197 1068 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ELAVL3Q14576 367 aaKnown RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 UNC5DQ6UXZ4 953 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SLC9B2Q86UD5 537 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 MFSD2AQ8NA29 543 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SH3YL1Q96HL8 342 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 DHRS1Q96LJ7 313 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ANKRD60Q9BZ19 345 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SLC2A4RGQ9NR83 387 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 EBF1Q9UH73 591 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 TMEM14AQ9Y6G1 99 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 GRXCR1A8MXD5 290 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PTGESO14684 152 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PRKYO43930 277 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 LATS1O95835 1130 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ADAP00813 363 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 CSTAP01040 98 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 DRD2P14416 443 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 EIF1AXP47813 144 aaKnown RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 GATMP50440 423 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 RIPPLY1Q0D2K3 151 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SNTB2Q13425 540 aaKnown RBP10.94□□□□□ -0.66
PTPRF-203ENST00000372407 UGT3A2Q3SY77 523 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 FAM76BQ5HYJ3 339 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 C22orf42Q6IC83 251 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 DGLUCYQ7Z3D6 616 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 CEACAM19Q7Z692 300 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 HUS1BQ8NHY5 278 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 FCAMRQ8WWV6 532 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 AKAP1Q92667 903 aaKnown RBP eCLIP10.94□□□□□ -0.663e-7■■■□□ 19.2
PTPRF-203ENST00000372407 CCDC120Q96HB5 630 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 OR2M4Q96R27 311 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 PAAF1Q9BRP4 392 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 HAPLN2Q9GZV7 340 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 MCCC2Q9HCC0 563 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 POLE4Q9NR33 117 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 ABCD2Q9UBJ2 740 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 SARDHQ9UL12 918 aa10.94□□□□□ -0.66
PTPRF-203ENST00000372407 MYO18AQ92614 2054 aaKnown RBP10.93□□□□□ -0.66
PTPRF-203ENST00000372407 MYH6P13533 1939 aa10.93□□□□□ -0.66
PTPRF-203ENST00000372407 LOC100509620A0A075B734 347 aa10.93□□□□□ -0.66
PTPRF-203ENST00000372407 KLHL33A6NCF5 533 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms