RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 RBCK1Q9BYM8 510 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 PRRG4Q9BZD6 226 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 TP63Q9H3D4 680 aaPredicted RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 ZNF639Q9UID6 485 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 BACE2Q9Y5Z0 518 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 ZNF701M0R085 212 aaPredicted RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 SMAD9O15198 467 aaKnown RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 ATE1O95260 518 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 RGNQ15493 299 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 IGFN1Q86VF2 1251 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 PIAS4Q8N2W9 510 aaPredicted RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 TEX26Q8N6G2 289 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 PAPD5Q8NDF8 572 aaKnown RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 DENND6BQ8NEG7 585 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.12□□□□□ -0.313e-7■■□□□ 12.7
VCP-201ENST00000358901 NR4A3Q92570 626 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 RFT1Q96AA3 541 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 MTG2Q9H4K7 406 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 C12orf4Q9NQ89 552 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 TLR9Q9NR96 1032 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 STOX2Q9P2F5 926 aaPredicted RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 USP3Q9Y6I4 520 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 ZNF670-ZNF695F2Z2N8 137 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 ARNTLO00327 626 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 SCDO00767 359 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 GJB3O75712 270 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 SRCP12931 536 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 HOXD8P13378 290 aaPredicted RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 APLP1P51693 650 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 KCTD11Q693B1 232 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 KLBQ86Z14 1044 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 IQCF2Q8IXL9 164 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 GPR26Q8NDV2 337 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 NDNFQ8TB73 568 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 CCDC107Q8WV48 283 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 S100A16Q96FQ6 103 aaKnown RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 MNTQ99583 582 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 WDR83Q9BRX9 315 aaKnown RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 POLMQ9NP87 494 aaPredicted RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 INTS6Q9UL03 887 aaKnown RBP13.12□□□□□ -0.31
VCP-201ENST00000358901 LIPT1Q9Y234 373 aa13.12□□□□□ -0.31
VCP-201ENST00000358901 KHNYNO15037 678 aaKnown RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 EEF1E1O43324 174 aaKnown RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 ADAP00813 363 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 FHP07954 510 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 HOXB2P14652 356 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 ZNF140P52738 457 aaPredicted RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 DEFA5Q01523 94 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 ZNF267Q14586 743 aaPredicted RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 KLHL26Q53HC5 615 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 RUNDC3AQ59EK9 446 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 RAB41Q5JT25 222 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 CLLU1OSQ5K130 101 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 ALKBH2Q6NS38 261 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 CEACAM19Q7Z692 300 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 ACBD7Q8N6N7 88 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 FANK1Q8TC84 345 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 SH3YL1Q96HL8 342 aaPredicted RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 UBXN10Q96LJ8 280 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 PCDHGB6Q9Y5F9 930 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 LOC100509620A0A075B734 347 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 OR2AT4A6NND4 320 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 WASH4PA8MWX3 477 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 RBMXL2O75526 392 aaKnown RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 ATP5A1P25705 553 aaKnown RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 ELAVL3Q14576 367 aaKnown RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 TMEM53Q6P2H8 277 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 BORAQ6PGQ7 559 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 TMEM107Q6UX40 140 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 MSANTD1Q6ZTZ1 278 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 GPALPP1Q8IXQ4 340 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 ZNF101Q8IZC7 436 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 ZNF615Q8N8J6 731 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 GAB3Q8WWW8 586 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 KHSRPQ92945 711 aaKnown RBP eCLIP13.11□□□□□ -0.311e-6■■□□□ 11.9
VCP-201ENST00000358901 JSRP1Q96MG2 331 aaPredicted RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 ACPTQ9BZG2 426 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 TRPV4Q9HBA0 871 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 CD8B2A6NJW9 211 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 SOBPA7XYQ1 873 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 CD8BP10966 210 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 PGAM2P15259 253 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 ACVR1BP36896 505 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 MAGEA2P43356 314 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 KCNC1P48547 511 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 NRROSQ86YC3 692 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 GID4Q8IVV7 300 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 IQCF1Q8N6M8 205 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 OR8K5Q8NH50 307 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 C16orf78Q8WTQ4 265 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 C15orf40Q8WUR7 153 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 JPH3Q8WXH2 748 aaPredicted RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 HSPA12BQ96MM6 686 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 NAA50Q9GZZ1 169 aaKnown RBP13.11□□□□□ -0.31
VCP-201ENST00000358901 IL20RAQ9UHF4 553 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 USP22Q9UPT9 525 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 GPR52Q9Y2T5 361 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 IFT52Q9Y366 437 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 LAMB4A4D0S4 1761 aa13.11□□□□□ -0.31
VCP-201ENST00000358901 HMX2A2RU54 273 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms