RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CXCR1P25024 350 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 ELP2Q6IA86 826 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 FAM198BQ6UWH4 519 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 Q6ZVL8 140 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 DBF4BQ8NFT6 615 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 FANK1Q8TC84 345 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 POTEKPQ9BYX7 375 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 OR10A4Q9H209 315 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 GPN2Q9H9Y4 310 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 NUPL2O15504 423 aaKnown RBP18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 AQP9O43315 295 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 FGF19O95750 216 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 CYB5AP00167 134 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 PAHP00439 452 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 GKP32189 559 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 TRAM1Q15629 374 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 DGLUCYQ7Z3D6 616 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 LILRA2Q8N149 483 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 OR8K5Q8NH50 307 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 OR5P2Q8WZ92 322 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 STRA6Q9BX79 667 aa18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 MKRN2Q9H000 416 aaKnown RBP18.72■□□□□ 0.59
CCDC88B-202ENST00000356786 SSTR4P31391 388 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 EVI2BP34910 448 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 RPS26P62854 115 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 SP3Q02447 781 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 TXNDC8Q6A555 127 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 WASH2PQ6VEQ5 465 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 BEST3Q8N1M1 668 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 SLC44A3Q8N4M1 653 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 TBC1D15Q8TC07 691 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 B4GALT6Q9UBX8 382 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 HMGB3O15347 200 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 ADAP00813 363 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 RGS19P49795 217 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 SNTA1Q13424 505 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 KCNC3Q14003 757 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 SPRYD7Q5W111 196 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 OR9A1PQ8NGU1 263 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 C17orf62Q9BQA9 187 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 MYH7P12883 1935 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 APODP05090 189 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 KEAP1Q14145 624 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 CPA6Q8N4T0 437 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 TOR1AIP2Q8NFQ8 470 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 SH3RF2Q8TEC5 729 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 SYT4Q9H2B2 425 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 POT1Q9NUX5 634 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 MRPS14O60783 128 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 VIPR1P32241 457 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 S100A12P80511 92 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 RANBP10Q6VN20 620 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 TEX26Q8N6G2 289 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 RASGEF1AQ8N9B8 481 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 PTERQ96BW5 349 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 TMEM41AQ96HV5 264 aa18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 DUS2Q9NX74 493 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-202ENST00000356786 MYH11P35749 1972 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 MMP20O60882 483 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 SCAPQ12770 1279 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 ZNF791Q3KP31 576 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 BCL7AQ4VC05 210 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 CNIH2Q6PI25 160 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 DCAF4L2Q8NA75 395 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 TMEM184CQ9NVA4 438 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 HMX3A6NHT5 357 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 FHP07954 510 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 ELNP15502 786 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 NAA10P41227 235 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 MASP1P48740 699 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 PLEKHS1Q5SXH7 462 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 VITQ6UXI7 678 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 LARP4Q71RC2 724 aaKnown RBP eCLIP18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 CMTM8Q8IZV2 173 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 BBS10Q8TAM1 723 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 ELMOD3Q96FG2 381 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 LAMP5Q9UJQ1 280 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 E7EQ34 232 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 ZBTB48P10074 688 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 ZNF30P17039 623 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 RCAN2Q14206 197 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 SHFQ7M4L6 423 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 TMPRSS12Q86WS5 348 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 CCDC116Q8IYX3 515 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 PCDHGA12O60330 932 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 JUPP14923 745 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 CD68P34810 354 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 ACTR1BP42025 376 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 INHBCP55103 352 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 ACTR1AP61163 376 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 EIF4HQ15056 248 aaKnown RBP18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 Q6ZNX1 250 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 OR9Q2Q8NGE9 314 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 SLC22A18Q96BI1 424 aa18.7■□□□□ 0.58
CCDC88B-202ENST00000356786 LOC105369274A0A096LPK9 316 aa18.69■□□□□ 0.58
CCDC88B-202ENST00000356786 A0A1W2PQ09 198 aa18.69■□□□□ 0.58
CCDC88B-202ENST00000356786 C8AP07357 584 aa18.69■□□□□ 0.58
CCDC88B-202ENST00000356786 DOC2AQ14183 400 aa18.69■□□□□ 0.58
CCDC88B-202ENST00000356786 LRRTM4Q86VH4 590 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms