RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SVILO95425 2214 aa8.34□□□□□ -1.07
RTN3-202ENST00000339997 COL1A1P02452 1464 aaPredicted RBP8.34□□□□□ -1.08
RTN3-202ENST00000339997 BHMG1C9JSJ3 638 aaPredicted RBP8.34□□□□□ -1.08
RTN3-202ENST00000339997 GJB3O75712 270 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 GATBO75879 557 aaKnown RBP8.34□□□□□ -1.08
RTN3-202ENST00000339997 PRKACBP22694 351 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 HTR1EP28566 365 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 MAGEA11P43364 429 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 GCGRP47871 477 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 CCR8P51685 355 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 ST3GAL3Q11203 375 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 CDK5R2Q13319 367 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 ABCA11PQ4W5N1 156 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 SPARTQ8N0X7 666 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 DENND6BQ8NEG7 585 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 OR5T1Q8NG75 326 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 OR52E4Q8NGH9 312 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 THAP3Q8WTV1 239 aaPredicted RBP8.34□□□□□ -1.08
RTN3-202ENST00000339997 NSMAFQ92636 917 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 S100A16Q96FQ6 103 aaKnown RBP8.34□□□□□ -1.08
RTN3-202ENST00000339997 HSPA12BQ96MM6 686 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 BCL7BQ9BQE9 202 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 SYNPO2LQ9H987 977 aa8.34□□□□□ -1.08
RTN3-202ENST00000339997 CAPN14A8MX76 684 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 ARL6IP5O75915 188 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 ZNF16P17020 682 aaPredicted RBP8.33□□□□□ -1.08
RTN3-202ENST00000339997 MYF6P23409 242 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 CD68P34810 354 aaPredicted RBP8.33□□□□□ -1.08
RTN3-202ENST00000339997 LEPRP48357 1165 aaKnown RBP8.33□□□□□ -1.08
RTN3-202ENST00000339997 SERINC3Q13530 473 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 NFATC4Q14934 902 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 GPR33Q49SQ1 333 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 ALG10Q5BKT4 473 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 ALG1LQ6GMV1 187 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 CFAP77Q6ZQR2 320 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 ZSWIM9Q86XI8 627 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 NAGSQ8N159 534 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 OR5T2Q8NGG2 359 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 BBS10Q8TAM1 723 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 HERVK_113Q902F9 699 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 SGCDQ92629 289 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 KCNJ9Q92806 393 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 APIPQ96GX9 242 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 NELL2Q99435 816 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 DOHHQ9BU89 302 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 TAPBPLQ9BX59 468 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 EMCNQ9ULC0 261 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 ERVK-19Q9WJR5 959 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 UGT2A1Q9Y4X1 527 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 PCDHGA6Q9Y5G7 932 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 B3GALT2O43825 422 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 MAFKO60675 156 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 RAB36O95755 333 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 CYP17A1P05093 508 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 CXCR1P25024 350 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 IL12BP29460 328 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 KCNC1P48547 511 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 PTH2RP49190 550 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 MECP2P51608 486 aaKnown RBP8.33□□□□□ -1.08
RTN3-202ENST00000339997 NFATC2Q13469 925 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 TDGQ13569 410 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 BCL7AQ4VC05 210 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 SLC27A4Q6P1M0 643 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 NLGN4XQ8N0W4 816 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 MINDY1Q8N5J2 469 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 DEFB119Q8N690 84 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 NCSTNQ92542 709 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 RGMAQ96B86 450 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 TESCQ96BS2 214 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 TMEM168Q9H0V1 697 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 TAS2R16Q9NYV7 291 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 CNIH4Q9P003 139 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 H3BUI4 141 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 CYB5AP00167 134 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 PEPDP12955 493 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 HNF1BP35680 557 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 CRISP1P54107 249 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 DNAJB13P59910 316 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 EMX1Q04741 257 aaPredicted RBP8.33□□□□□ -1.08
RTN3-202ENST00000339997 INCA1Q0VD86 236 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 ENPP2Q13822 863 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 DOC2AQ14183 400 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 SMAD2Q15796 467 aaKnown RBP8.33□□□□□ -1.08
RTN3-202ENST00000339997 GXYLT1Q4G148 440 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 KRBOX4Q5JUW0 171 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 WDR53Q7Z5U6 358 aaPredicted RBP8.33□□□□□ -1.08
RTN3-202ENST00000339997 TSPAN33Q86UF1 283 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 TTC9BQ8N6N2 239 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 KREMEN2Q8NCW0 462 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 ACOT12Q8WYK0 555 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 TFAP2CQ92754 450 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 BIRC8Q96P09 236 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 ANKRD60Q9BZ19 345 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 FAM120CQ9NX05 1096 aaKnown RBP8.33□□□□□ -1.08
RTN3-202ENST00000339997 CALML5Q9NZT1 146 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 UBQLN2Q9UHD9 624 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 RABL2BQ9UNT1 228 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 MYH13Q9UKX3 1938 aa8.33□□□□□ -1.08
RTN3-202ENST00000339997 ACPPP15309 386 aa8.32□□□□□ -1.08
RTN3-202ENST00000339997 ZNF14P17017 642 aaPredicted RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms