RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 KMT5CQ86Y97 462 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 BPIFB6Q8NFQ5 453 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 TBC1D20Q96BZ9 403 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 IP6K3Q96PC2 410 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 TSPAN11A1L157 253 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 MYL9P24844 172 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 GPR143P51810 404 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 ARFIP1P53367 373 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 MZT2AQ6P582 158 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 ATCAYQ86WG3 371 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 CACTIN-AS1Q8N1I8 211 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 KRTCAP2Q8N6L1 136 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 ZNF559Q9BR84 538 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 ELL3Q9HB65 397 aaPredicted RBP9.66□□□□□ -0.86
USP54-201ENST00000339859 ASB6Q9NWX5 421 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 SH3PXD2BA1X283 911 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 VSTM2BA6NLU5 285 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 EFCAB9A8MZ26 197 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 K7ESM1 405 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 HMGN1P05114 100 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 RPS17P08708 135 aaKnown RBP9.66□□□□□ -0.86
USP54-201ENST00000339859 DEFA1P59665 94 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 DEFA3P59666 94 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 GRIK2Q13002 908 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 ALG1LQ6GMV1 187 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 EFHD2Q96C19 240 aaPredicted RBP9.66□□□□□ -0.86
USP54-201ENST00000339859 MYEOVQ96EZ4 313 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 SERHL2Q9H4I8 314 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 MYNNQ9NPC7 610 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 SERHLQ9NQF3 203 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 PAPOLBQ9NRJ5 636 aaKnown RBP9.66□□□□□ -0.86
USP54-201ENST00000339859 FGF21Q9NSA1 209 aa9.66□□□□□ -0.86
USP54-201ENST00000339859 RPS6KA3P51812 740 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 ELF3P78545 371 aaPredicted RBP9.65□□□□□ -0.86
USP54-201ENST00000339859 OPN5Q6U736 354 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 WDR5BQ86VZ2 330 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 GTPBP3Q969Y2 492 aaKnown RBP9.65□□□□□ -0.86
USP54-201ENST00000339859 NDUFA13Q9P0J0 144 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 CLEC1BQ9P126 229 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 PLEKHM1Q9Y4G2 1056 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 A0A1B0GX78 115 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 POM121BA6NF01 834 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 EPOPA6NHQ4 379 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 GABBR2O75899 941 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 ANXA8P13928 327 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 SLC5A2P31639 672 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 XIAPP98170 497 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 HSDL2Q6YN16 418 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 C6orf120Q7Z4R8 191 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 OR6N1Q8NGY5 312 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 SNX33Q8WV41 574 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 CENPNQ96H22 339 aaPredicted RBP9.65□□□□□ -0.86
USP54-201ENST00000339859 S100A14Q9HCY8 104 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 UPB1Q9UBR1 384 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 MMACHCQ9Y4U1 282 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 TMEM202A6NGA9 273 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 C4orf47A7E2U8 309 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 K7EQS6 105 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 FOXE1O00358 373 aaPredicted RBP9.65□□□□□ -0.86
USP54-201ENST00000339859 TFECO14948 347 aaPredicted RBP9.65□□□□□ -0.86
USP54-201ENST00000339859 GPR39O43194 453 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 TPD52L2O43399 206 aaKnown RBP9.65□□□□□ -0.86
USP54-201ENST00000339859 LHCGRP22888 699 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 ST13P50502 369 aaKnown RBP9.65□□□□□ -0.86
USP54-201ENST00000339859 NR0B1P51843 470 aaKnown RBP9.65□□□□□ -0.86
USP54-201ENST00000339859 GALNT5Q7Z7M9 940 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 ZNF100Q8IYN0 542 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 ZADH2Q8N4Q0 377 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 SFXN5Q8TD22 340 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 PLEKHA1Q9HB21 404 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 CUEDC1Q9NWM3 386 aaPredicted RBP9.65□□□□□ -0.86
USP54-201ENST00000339859 GRHPRQ9UBQ7 328 aa9.65□□□□□ -0.86
USP54-201ENST00000339859 CCDC187A0A096LP49 1063 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 SPTY2D1-AS1A0A0U1RR47 76 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 AQP12BA6NM10 295 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 RGS5O15539 181 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 ZNF821O75541 412 aaPredicted RBP9.65□□□□□ -0.87
USP54-201ENST00000339859 TECPR1Q7Z6L1 1165 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 AQP12AQ8IXF9 295 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 CDRT4Q8N9R6 151 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 GATSQ8NAP1 163 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 ZNF671Q8TAW3 534 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 LKAAEAR1Q8TD35 194 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 SLAMF7Q9NQ25 335 aa9.65□□□□□ -0.87
USP54-201ENST00000339859 BOKQ9UMX3 212 aaPredicted RBP9.65□□□□□ -0.87
USP54-201ENST00000339859 CPSF4LA6NMK7 179 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 BCKDKO14874 412 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 ASNA1O43681 348 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 XRCC1P18887 633 aaPredicted RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 PMS2P3Q13401 168 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 MRPL49Q13405 166 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 PTPRRQ15256 657 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 GGTA1PQ4G0N0 100 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 TMEM150AQ86TG1 271 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 VWA5B2Q8N398 1253 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 GNPDA2Q8TDQ7 276 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 UTP23Q9BRU9 249 aaKnown RBP9.64□□□□□ -0.87
USP54-201ENST00000339859 TMEM45AQ9NWC5 275 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 HAT1O14929 419 aa9.64□□□□□ -0.87
USP54-201ENST00000339859 SLITRK5O94991 958 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms