RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PPP1R32Q7Z5V6 425 aa20.77■□□□□ 0.92
SDC3-202ENST00000339394 ADAMTS17Q8TE56 1095 aa20.77■□□□□ 0.92
SDC3-202ENST00000339394 ZCCHC14Q8WYQ9 949 aaKnown RBP20.77■□□□□ 0.92
SDC3-202ENST00000339394 ZNF681Q96N22 645 aa20.77■□□□□ 0.92
SDC3-202ENST00000339394 PRPF18Q99633 342 aaKnown RBP20.77■□□□□ 0.92
SDC3-202ENST00000339394 ZIM2Q9NZV7 527 aa20.77■□□□□ 0.92
SDC3-202ENST00000339394 MAPRE3Q9UPY8 281 aa20.77■□□□□ 0.92
SDC3-202ENST00000339394 SOCS6O14544 535 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 PCDH17O14917 1159 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 NKX2-8O15522 239 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 LAMP1P11279 417 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 GPX3P22352 226 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 IL12AP29459 219 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 BIKQ13323 160 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 CPTPQ5TA50 214 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 KIRREL2Q6UWL6 708 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 OR9I1Q8NGQ6 314 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 RBM18Q96H35 190 aaKnown RBP20.76■□□□□ 0.91
SDC3-202ENST00000339394 ZNF385DQ9H6B1 395 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 CLMPQ9H6B4 373 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 C19orf25Q9UFG5 118 aaPredicted RBP20.76■□□□□ 0.91
SDC3-202ENST00000339394 LOC102723996A0A087X1L8 192 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 IGHV3-20A0A0C4DH32 117 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 C9JVG2 144 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 IFNA16P05015 189 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 SLC35E2P0CK97 266 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 CPMP14384 443 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 PORP16435 677 aaPredicted RBP20.76■□□□□ 0.91
SDC3-202ENST00000339394 ATP4BP51164 291 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 CLNS1AP54105 237 aaKnown RBP20.76■□□□□ 0.91
SDC3-202ENST00000339394 IRX1P78414 480 aaPredicted RBP20.76■□□□□ 0.91
SDC3-202ENST00000339394 FOXK2Q01167 660 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 TLE3Q04726 772 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 SQLEQ14534 574 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 CEBPEQ15744 281 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 MPEG1Q2M385 716 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 LRRC69Q6ZNQ3 347 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 CPEB2Q7Z5Q1 589 aaKnown RBP20.76■□□□□ 0.91
SDC3-202ENST00000339394 SAMD14Q8IZD0 417 aaPredicted RBP20.76■□□□□ 0.91
SDC3-202ENST00000339394 ST13P4Q8IZP2 240 aaPredicted RBP20.76■□□□□ 0.91
SDC3-202ENST00000339394 C7orf57Q8NEG2 295 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 PPWD1Q96BP3 646 aaKnown RBP20.76■□□□□ 0.91
SDC3-202ENST00000339394 TESCQ96BS2 214 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 COQ8BQ96D53 544 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 ENTPD4Q9Y227 616 aa20.76■□□□□ 0.91
SDC3-202ENST00000339394 LOC400499M0QZD8 3231 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 ACACAQ13085 2346 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 TMEM8BA6NDV4 472 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 CSNK2A2P19784 350 aaPredicted RBP20.75■□□□□ 0.91
SDC3-202ENST00000339394 STT3AP46977 705 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 OR4D2P58180 307 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 DUSP2Q05923 314 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 PGS1Q32NB8 556 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 SFT2D3Q587I9 215 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 ATP1A1-AS1Q5TC04 95 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 CAMKMTQ7Z624 323 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 RAB43Q86YS6 212 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 CCDC116Q8IYX3 515 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 KDF1Q8NAX2 398 aaPredicted RBP20.75■□□□□ 0.91
SDC3-202ENST00000339394 GLB1L3Q8NCI6 653 aaPredicted RBP20.75■□□□□ 0.91
SDC3-202ENST00000339394 OR11G2Q8NGC1 345 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 CIDECQ96AQ7 238 aaPredicted RBP20.75■□□□□ 0.91
SDC3-202ENST00000339394 PNO1Q9NRX1 252 aaKnown RBP20.75■□□□□ 0.91
SDC3-202ENST00000339394 GIMAP4Q9NUV9 329 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 ATAD3AQ9NVI7 634 aa20.75■□□□□ 0.91
SDC3-202ENST00000339394 SYNDIG1LA6NDD5 238 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 ZNF891A8MT65 544 aaPredicted RBP20.74■□□□□ 0.91
SDC3-202ENST00000339394 OR10H2O60403 315 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 DDX5P17844 614 aaKnown RBP20.74■□□□□ 0.91
SDC3-202ENST00000339394 PLIN5Q00G26 463 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 EEF1A2Q05639 463 aaKnown RBP20.74■□□□□ 0.91
SDC3-202ENST00000339394 FAM174BQ3ZCQ3 159 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 CRTC2Q53ET0 693 aaPredicted RBP20.74■□□□□ 0.91
SDC3-202ENST00000339394 SPANXN4Q5MJ08 99 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 GKAP1Q5VSY0 366 aaPredicted RBP20.74■□□□□ 0.91
SDC3-202ENST00000339394 MRGPREQ86SM8 312 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 LRRC25Q8N386 305 aaPredicted RBP20.74■□□□□ 0.91
SDC3-202ENST00000339394 CPSF7Q8N684 471 aaKnown RBP20.74■□□□□ 0.91
SDC3-202ENST00000339394 OR8J2Q8NGG1 315 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 DGAT2Q96PD7 388 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 BBS4Q96RK4 519 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 ZBTB18Q99592 522 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 WDR77Q9BQA1 342 aaPredicted RBP20.74■□□□□ 0.91
SDC3-202ENST00000339394 NMUR2Q9GZQ4 415 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 ADAP2Q9NPF8 381 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 SLAMF7Q9NQ25 335 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 SAR1AQ9NR31 198 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 P4HTMQ9NXG6 502 aa20.74■□□□□ 0.91
SDC3-202ENST00000339394 A0A087WV48 116 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 CDC14CA4D256 554 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 A8MUA0 341 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 MYO1GB0I1T2 1018 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 PRKAR1AP10644 381 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 ITPKBP27987 946 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 MPIP34949 423 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 ZFP36L2P47974 494 aaKnown RBP20.73■□□□□ 0.91
SDC3-202ENST00000339394 SRSF11Q05519 484 aaKnown RBP20.73■□□□□ 0.91
SDC3-202ENST00000339394 ELAVL1Q15717 326 aaKnown RBP20.73■□□□□ 0.91
SDC3-202ENST00000339394 DPY19L1Q2PZI1 675 aa20.73■□□□□ 0.91
SDC3-202ENST00000339394 CPZQ66K79 652 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms