RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 NME1P15531 152 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 PMCHP20382 165 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 PKLRP30613 574 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TCL1AP56279 114 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 CACNG7P62955 275 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF77Q15935 545 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM249Q2WGJ8 235 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 DCLRE1AQ6PJP8 1040 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ENPP7Q6UWV6 458 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ERN2Q76MJ5 926 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 OR2T12Q8NG77 320 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ARRDC3Q96B67 414 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 OR52E6Q96RD3 313 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM59Q9BXS4 323 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 LDAHQ9H6V9 325 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 NT5DC2Q9H857 520 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 CAPN6Q9Y6Q1 641 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 CDHR2Q9BYE9 1310 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ELOA3CA0A087WX78 387 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 KBTBD13C9JR72 458 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC25A5P05141 298 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 OR56A5P0C7T3 313 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 CD247P20963 164 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 HADHBP55084 474 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 C9orf64Q5T6V5 341 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TATDN1Q6P1N9 297 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 CATSPERGQ6ZRH7 1159 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 RBMXL1Q96E39 390 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 OR52A5Q9H2C5 316 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 NIPAL2Q9H841 368 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 FOLH1BQ9HBA9 442 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 RAVER2Q9HCJ3 691 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM9BQ9NQ34 198 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 PRDM7Q9NQW5 492 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 SNX12Q9UMY4 172 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ATP10AO60312 1499 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 IGSF9BQ9UPX0 1349 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 FAM227AF5H4B4 570 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 CSF1P09603 554 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TACSTD2P09758 323 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 LAMP2P13473 410 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 RPL29P47914 159 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 SCNN1DP51172 638 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 KCNJ2P63252 427 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TGFBIQ15582 683 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 GOLGA7BQ2TAP0 167 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 LSM12Q3MHD2 195 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 C6orf89Q6UWU4 347 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 ALDH16A1Q8IZ83 802 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 LRRC57Q8N9N7 239 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 TCP10LQ8TDR4 215 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 GRHL3Q8TE85 626 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 HDAC8Q9BY41 377 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 BARX1Q9HBU1 254 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 SIX4Q9UIU6 781 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 BACE2Q9Y5Z0 518 aa7.35□□□□□ -1.23
LIMCH1-201ENST00000313860 IQGAP1P46940 1657 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 SHPRHQ149N8 1683 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 CARMIL3Q8ND23 1372 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 FAM237BA0A1B0GVD1 139 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 WDR27A2RRH5 827 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 CBX4O00257 560 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF264O43296 627 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 KCNAB3O43448 404 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 FABP4P15090 132 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 BMP6P22004 513 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TCTAP57738 103 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 PLP1P60201 277 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 MTHFSDQ2M296 383 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF484Q5JVG2 852 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF470Q6ECI4 717 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 KLHDC10Q6PID8 442 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 OR52L2PQ8NGH6 319 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 OR5M8Q8NGP6 311 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 RDH11Q8TC12 318 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 SOCS4Q8WXH5 440 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ELMOD3Q96FG2 381 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 MBOAT7Q96N66 472 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC30A2Q9BRI3 323 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM231Q9H6L2 316 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 PLSCR2Q9NRY7 297 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 PGPEP1Q9NXJ5 209 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 AAR2Q9Y312 384 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF732B4DXR9 585 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 RFPL2O75678 378 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 EN2P19622 333 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 SSTR2P30874 369 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 RPA3P35244 121 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 SRPXP78539 464 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 GBE1Q04446 702 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 OR8G1Q15617 311 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ATXN7L2Q5T6C5 722 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TOMM20LQ6UXN7 152 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 RAD9BQ6WBX8 426 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TRABD2AQ86V40 505 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF610Q8N9Z0 462 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ABHD11Q8NFV4 315 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 TTLQ8NG68 377 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ZCCHC10Q8TBK6 192 aa7.34□□□□□ -1.23
LIMCH1-201ENST00000313860 ADAMTS15Q8TE58 950 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms