RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ZFP41Q8N8Y5 198 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 CHPT1Q8WUD6 406 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 TEFMQ96QE5 360 aaKnown RBP15.78■□□□□ 0.12
VPS54-201ENST00000272322 OR51I1Q9H343 314 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 POFUT2Q9Y2G5 429 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 NTNG1Q9Y2I2 539 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 KCNE3Q9Y6H6 103 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 KPNA4O00629 521 aaPredicted RBP15.78■□□□□ 0.12
VPS54-201ENST00000272322 NDUFS4O43181 175 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 CLDN2P57739 230 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 TMEM240Q5SV17 173 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 TCTN3Q6NUS6 607 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 CADM3Q8N126 398 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 CYP4Z2PQ8N1L4 340 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 SIMC1Q8NDZ2 872 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 PPP1R16AQ96I34 528 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 CNDP2Q96KP4 475 aaKnown RBP15.78■□□□□ 0.12
VPS54-201ENST00000272322 TREX2Q9BQ50 279 aaPredicted RBP15.78■□□□□ 0.12
VPS54-201ENST00000272322 POLR2J3Q9H1A7 115 aaKnown RBP15.78■□□□□ 0.12
VPS54-201ENST00000272322 AKIP1Q9NQ31 210 aa15.78■□□□□ 0.12
VPS54-201ENST00000272322 CDK1P06493 297 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 EPHA5P54756 1037 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 HEPACAMQ14CZ8 416 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 DCST1Q5T197 706 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 TMEM107Q6UX40 140 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 OR4E2Q8NGC2 313 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 MAGEB10Q96LZ2 347 aaPredicted RBP15.77■□□□□ 0.12
VPS54-201ENST00000272322 MGLLQ99685 303 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 CCNB1IP1Q9NPC3 277 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 MYNNQ9NPC7 610 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 AHSPQ9NZD4 102 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 TRIM64BA6NI03 449 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 PSMD11O00231 422 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 RECKO95980 971 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 SRPRAP08240 638 aaKnown RBP15.77■□□□□ 0.12
VPS54-201ENST00000272322 ARAFP10398 606 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 PIK3CBP42338 1070 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 XCR1P46094 333 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 SNRPNP63162 240 aaKnown RBP15.77■□□□□ 0.12
VPS54-201ENST00000272322 ZNF404Q494X3 552 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 SLC7A13Q8TCU3 470 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 FBLIM1Q8WUP2 373 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 TOR4AQ9NXH8 423 aa15.77■□□□□ 0.12
VPS54-201ENST00000272322 TBC1D3DA0A087WVF3 549 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 TBC1D3IA0A087WXS9 549 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 TBC1D3EA0A087X179 549 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 TBC1D3KA0A087X1G2 549 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 PRAMEF27A3QJZ7 478 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 TBC1D3FA6NER0 549 aaPredicted RBP15.77■□□□□ 0.11
VPS54-201ENST00000272322 ZNF860A6NHJ4 632 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 CLDN24A6NM45 220 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 ISM1B1AKI9 464 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 TBC1D3LB9A6J9 549 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 SSX4O60224 188 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 KIAA0513O60268 411 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 RB1P06400 928 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 TBC1D3HP0C7X1 549 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 DDCP20711 480 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 AK4P27144 223 aaPredicted RBP15.77■□□□□ 0.11
VPS54-201ENST00000272322 CCR8P51685 355 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 CRISP1P54107 249 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 HTRA4P83105 476 aaPredicted RBP15.77■□□□□ 0.11
VPS54-201ENST00000272322 ZNF630Q2M218 657 aaPredicted RBP15.77■□□□□ 0.11
VPS54-201ENST00000272322 TBC1D3GQ6DHY5 549 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 TBC1D3CQ6IPX1 549 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 PDZD3Q86UT5 571 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 TBC1D3Q8IZP1 549 aaPredicted RBP15.77■□□□□ 0.11
VPS54-201ENST00000272322 ZNF566Q969W8 418 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 C19orf43Q9BQ61 176 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 SERHL2Q9H4I8 314 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 C6orf106Q9H6K1 298 aaPredicted RBP15.77■□□□□ 0.11
VPS54-201ENST00000272322 CHCHD3Q9NX63 227 aaKnown RBP15.77■□□□□ 0.11
VPS54-201ENST00000272322 GIN1Q9NXP7 522 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 SPHK1Q9NYA1 384 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 IFT52Q9Y366 437 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 GMEB1Q9Y692 573 aa15.77■□□□□ 0.11
VPS54-201ENST00000272322 H0Y8X5 98 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 FOXE1O00358 373 aaPredicted RBP15.76■□□□□ 0.11
VPS54-201ENST00000272322 KAT7O95251 611 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 NFATC1O95644 943 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 ITGA2P17301 1181 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 UQCRC2P22695 453 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 DDX6P26196 483 aaKnown RBP eCLIP15.76■□□□□ 0.11
VPS54-201ENST00000272322 BSGP35613 385 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 IQCHQ86VS3 1027 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 RASGRP3Q8IV61 690 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 ETFBKMTQ8IXQ9 262 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 MFSD4AQ8N468 514 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 C7orf57Q8NEG2 295 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 ZCCHC10Q8TBK6 192 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 LRIG1Q96JA1 1093 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 WDR26Q9H7D7 661 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 SNTG1Q9NSN8 517 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 SPATA7Q9P0W8 599 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 HMGN4O00479 90 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 IFNA14P01570 189 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 AVPR1BP47901 424 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 RGS6P49758 472 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 OLR1P78380 273 aa15.76■□□□□ 0.11
VPS54-201ENST00000272322 DUSP2Q05923 314 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms