RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CCNG1P51959 295 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 PHEXP78562 749 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 SERTAD2Q14140 314 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 GGTA1PQ4G0N0 100 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 UNC50Q53HI1 259 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 TTMPQ5BVD1 217 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 C10orf62Q5T681 223 aaPredicted RBP17.93■□□□□ 0.46
CLN3-260ENST00000637578 MRM1Q6IN84 353 aaKnown RBP17.93■□□□□ 0.46
CLN3-260ENST00000637578 C10orf107Q8IVU9 208 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 HORMAD2Q8N7B1 307 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 C7orf57Q8NEG2 295 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 ZNF483Q8TF39 744 aaPredicted RBP17.93■□□□□ 0.46
CLN3-260ENST00000637578 NCLNQ969V3 563 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 CCDC126Q96EE4 140 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 L3HYPDHQ96EM0 354 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 CDK15Q96Q40 435 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 DDX31Q9H8H2 851 aaKnown RBP17.93■□□□□ 0.46
CLN3-260ENST00000637578 KCNK9Q9NPC2 374 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 LRFN1Q9P244 771 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 SLC5A6Q9Y289 635 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 SPACA6W5XKT8 324 aa17.93■□□□□ 0.46
CLN3-260ENST00000637578 TRBV11-1A0A0K0K1C0 115 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 ASPDHA6ND91 283 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 TMEM200CA6NKL6 621 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 LDB3O75112 727 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 LDLRP01130 860 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 SP1P08047 785 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 CD46P15529 392 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 IMPDH1P20839 514 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 CPN2P22792 545 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 MST1P26927 711 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 ETV4P43268 484 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 HLCSP50747 726 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 RAP1GDS1P52306 607 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 CDH13P55290 713 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 STX4Q12846 297 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 GPR180Q86V85 440 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 MORN4Q8NDC4 146 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 DAZLQ92904 295 aaKnown RBP17.92■□□□□ 0.46
CLN3-260ENST00000637578 ATP6V1G3Q96LB4 118 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 HES7Q9BYE0 225 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 OXSMQ9NWU1 459 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 FBXW2Q9UKT8 454 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 ATG4BQ9Y4P1 393 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 SVILO95425 2214 aa17.92■□□□□ 0.46
CLN3-260ENST00000637578 SPTAN1Q13813 2472 aaKnown RBP17.92■□□□□ 0.46
CLN3-260ENST00000637578 A0A0A6YYD5 115 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 PROM1O43490 865 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 SUPT7LO94864 414 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 GP1BBP13224 206 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 CYB561P49447 251 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 OC90Q02509 493 aaPredicted RBP17.91■□□□□ 0.46
CLN3-260ENST00000637578 SLC25A25Q6KCM7 469 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 CCNYL1Q8N7R7 359 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 GOLGA6L1Q8N7Z2 621 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 OR14A16Q8NHC5 309 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 TANKQ92844 425 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 ATP6V1E2Q96A05 226 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 MECRQ9BV79 373 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 SEMA4BQ9NPR2 832 aaPredicted RBP17.91■□□□□ 0.46
CLN3-260ENST00000637578 PHF11Q9UIL8 331 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 ASB4Q9Y574 426 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 CLCA3PQ9Y6N3 262 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 A0A1B0GTL3 188 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 TMEM120BA0PK00 339 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 PPP6CO00743 305 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 FCHO1O14526 889 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 TM9SF1O15321 606 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 FGF17O60258 216 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 PRKNO60260 465 aaPredicted RBP17.91■□□□□ 0.46
CLN3-260ENST00000637578 EEDO75530 441 aaKnown RBP17.91■□□□□ 0.46
CLN3-260ENST00000637578 SEMA3DO95025 777 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 IFNA16P05015 189 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 STSP08842 583 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 TSPAN8P19075 237 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 ALDH3A1P30838 453 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 NAGLUP54802 743 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 HNRNPH2P55795 449 aaKnown RBP17.91■□□□□ 0.46
CLN3-260ENST00000637578 DNAJB13P59910 316 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 PMP22Q01453 160 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 BIKQ13323 160 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 C4orf17Q53FE4 359 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 FRG2Q64ET8 278 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 TMEM178AQ8NBL3 297 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 C5orf34Q96MH7 638 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 FRG2BQ96QU4 278 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 SERPINI1Q99574 410 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 RPF2Q9H7B2 306 aaKnown RBP17.91■□□□□ 0.46
CLN3-260ENST00000637578 PRM3Q9NNZ6 103 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 KLHL1Q9NR64 748 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 OSGIN2Q9Y236 505 aa17.91■□□□□ 0.46
CLN3-260ENST00000637578 ZGRF1Q86YA3 2104 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 MYOCOSA0A1B0GUC4 107 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 CYSRT1A8MQ03 144 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 TMPRSS11DO60235 418 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 NME2P1O60361 137 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 SLC25A12O75746 678 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 WISP2O76076 250 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 ZFAND5O76080 213 aa17.9■□□□□ 0.46
CLN3-260ENST00000637578 ZWINTO95229 277 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms