RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 C1orf146Q5VVC0 180 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 METTL21CQ5VZV1 264 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 TIGD3Q6B0B8 471 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 DHRS7BQ6IAN0 325 aaPredicted RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 ASPHD2Q6ICH7 369 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 FBXO42Q6P3S6 717 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 FUT10Q6P4F1 479 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 RNASEKQ6P5S7 137 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 ZNF530Q6P9A1 599 aaPredicted RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 TEX38Q6PEX7 206 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 METTL7BQ6UX53 244 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 TMEM108Q6UXF1 575 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 KIAA1324Q6UXG2 1013 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 Q6ZPB1 254 aaPredicted RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 KCTD1Q719H9 257 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PGAP1Q75T13 922 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 ARCQ7LC44 396 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 CXXC5Q7LFL8 322 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 SSX9Q7RTT3 188 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 GSTA5Q7RTV2 222 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 SMIM15Q7Z3B0 74 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 C16orf62Q7Z3J2 963 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PATL1Q86TB9 770 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 VSTM4Q8IW00 320 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 ARHGEF19Q8IW93 802 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PRSS58Q8IYP2 241 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 RBFAQ8N0V3 343 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 OR4N4Q8N0Y3 316 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 Q8N1Y9 231 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PQLC1Q8N2U9 271 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 ZNF276Q8N554 614 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PCDH20Q8N6Y1 951 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 CCDC197Q8NCU1 140 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PPFIBP2Q8ND30 876 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 NSUN7Q8NE18 718 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 CPEB3Q8NE35 698 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 FAM83FQ8NEG4 500 aaPredicted RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 MARCH1Q8TCQ1 289 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PNPT1Q8TCS8 783 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 ABHD5Q8WTS1 349 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 SETD7Q8WTS6 366 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 SLC35F5Q8WV83 523 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 NRGNQ92686 78 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 MTERF3Q96E29 417 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 OMA1Q96E52 524 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PPP1R16AQ96I34 528 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 DYDC2Q96IM9 177 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 DNAJC1Q96KC8 554 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 LMLNQ96KR4 655 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PACRGQ96M98 296 aaPredicted RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 GLT1D1Q96MS3 346 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 MBOAT7Q96N66 472 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 CSPG4P5Q96PW8 444 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 VPS35Q96QK1 796 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 TGS1Q96RS0 853 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 OLFM1Q99784 485 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 FOXB1Q99853 325 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PSD2Q9BQI7 771 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 ZNF559Q9BR84 538 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 KATNBL1Q9H079 304 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 SLCO5A1Q9H2Y9 848 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 ZSCAN16Q9H4T2 348 aaPredicted RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 ELOVL6Q9H5J4 265 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 WDR55Q9H6Y2 383 aaPredicted RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 RAVER2Q9HCJ3 691 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 RANGRFQ9HD47 186 aaPredicted RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 ZDHHC4Q9NPG8 344 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 UFSP2Q9NUQ7 469 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PLK2Q9NYY3 685 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PTTG3PQ9NZH4 202 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 TXNDC16Q9P2K2 825 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 DNMT3BQ9UBC3 853 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 UPB1Q9UBR1 384 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 BCAP29Q9UHQ4 241 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 LCMT1Q9UIC8 334 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 RAB21Q9UL25 225 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 A4GNTQ9UNA3 340 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PIGLQ9Y2B2 252 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 REXO2Q9Y3B8 237 aaKnown RBP2.84□□□□□ -1.95
VIM-210ENST00000637053 ZNF175Q9Y473 711 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 ASB1Q9Y576 335 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 PCDHB7Q9Y5E2 793 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 NPTNQ9Y639 398 aa2.84□□□□□ -1.95
VIM-210ENST00000637053 GRIN2DO15399 1336 aa2.84□□□□□ -1.96
VIM-210ENST00000637053 RPTORQ8N122 1335 aa2.84□□□□□ -1.96
VIM-210ENST00000637053 ZNF233A6NK53 670 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 ZNF729A6NN14 1252 aaPredicted RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 KLRF2D3W0D1 207 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 MCIDASD6RGH6 385 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 MKRN2OSH3BPM6 223 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 SLC28A1O00337 649 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 OGG1O15527 345 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 PRAMEF2O60811 474 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 BCAS1O75363 584 aaPredicted RBP2.83□□□□□ -1.96
VIM-210ENST00000637053 NOL4O94818 638 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 NKX2-2O95096 273 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 NXPH2O95156 264 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 ZWINTO95229 277 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 DEXIO95424 95 aa2.83□□□□□ -1.96
VIM-210ENST00000637053 H6PDO95479 791 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms