RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 HOXD1Q9GZZ0 328 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 OR10A4Q9H209 315 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 FZD8Q9H461 694 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 ACTL8Q9H568 366 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 EGLN3Q9H6Z9 239 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 STAU2Q9NUL3 570 aaKnown RBP eCLIP0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 NDE1Q9NXR1 346 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 TERF2IPQ9NYB0 399 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 NFKBIL1Q9UBC1 381 aaPredicted RBP0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 DBF4Q9UBU7 674 aaPredicted RBP0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 IL36AQ9UHA7 158 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 ASIC3Q9UHC3 531 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 ITM2BQ9Y287 266 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 SH3GLB1Q9Y371 365 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 PCDHGA1Q9Y5H4 931 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 USP16Q9Y5T5 823 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 AUP1Q9Y679 476 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 POMT1Q9Y6A1 747 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 CCDC88CQ9P219 2028 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 CPAMD8Q8IZJ3 1885 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 PRUNE2Q8WUY3 3088 aa0.92□□□□□ -2.26
SMARCB1-209ENST00000635578 MUC6Q6W4X9 2439 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MAP3K15Q6ZN16 1313 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MUC19Q7Z5P9 8384 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SCN2AQ99250 2005 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SZT2Q5T011 3432 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MKI67P46013 3256 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 IGLV3-10A0A075B6K4 115 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 TRAV18A0A075B6X5 111 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 LOC105371242A0A075B767 164 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 A0A087WZ39 114 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 TRAV34A0A0B4J273 112 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 A0A1B0GTH9 108 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 hCG_38984A0A1B0GV85 526 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 A0A1W2PPK0 400 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MEX3AA1L020 520 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 CCDC162PA2VCL2 907 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ACOD1A6NK06 481 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ANXA2P2A6NMY6 339 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 A8MXE2 369 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PRSS46E5RG02 174 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 FAM86B1E9PN63 330 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 UBE2CO00762 179 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SOCS3O14543 225 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PTGESO14684 152 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 OGTO15294 1046 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 INPP4BO15327 924 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ZNF749O43361 778 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PI15O43692 258 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 KIF5CO60282 957 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PLOD3O60568 738 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 GALR3O60755 368 aaPredicted RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PRAF2O60831 178 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 TBX10O75333 385 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SAP30O75446 220 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 GRAP2O75791 330 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RECQL5O94762 991 aaPredicted RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SLU7O95391 586 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MOCS2O96007 188 aaPredicted RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 HPP00738 406 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 IGHV3-13P01766 116 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 C9P02748 559 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MT-ND2P03891 347 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 GBAP04062 536 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RLN1P04808 185 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ADRB2P07550 413 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 YES1P07947 543 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 LYNP07948 512 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 HSP90AB1P08238 724 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 FAM86B2P0C5J1 330 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 TCF4P15884 667 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 GOT1P17174 413 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 LBPP18428 481 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PTAFRP25105 342 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PSMA3P25788 255 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RBMS1P29558 406 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PKLRP30613 574 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 GPR183P32249 361 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SOAT1P35610 550 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 SLC1A3P43003 542 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 NPBWR1P48145 328 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 NPY4RP50391 375 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 CLCN4P51793 760 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 RIDAP52758 137 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 LIMK1P53667 647 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 NDUFV3P56181 108 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ERVK-16P61578 105 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 IRX4P78413 519 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 FOLH1Q04609 750 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 PAX8Q06710 450 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ZFP36L1Q07352 338 aaKnown RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 TEFQ10587 303 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 COX10Q12887 443 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 NFATC2Q13469 925 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 KIAA0141Q14154 515 aaPredicted RBP0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 GCKRQ14397 625 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 MAPK11Q15759 364 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 TAZQ16635 292 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 ECSCRQ19T08 205 aa0.91□□□□□ -2.26
SMARCB1-209ENST00000635578 HYAL4Q2M3T9 481 aa0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms