RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PI4KAP1Q8N8J0 262 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 SNRNP27Q8WVK2 155 aaKnown RBP1.65□□□□□ -2.15
SCN1A-208ENST00000625916 PGAP3Q96FM1 320 aaPredicted RBP1.65□□□□□ -2.15
SCN1A-208ENST00000625916 TSSK2Q96PF2 358 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 KIR2DL4Q99706 377 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 SLF1Q9BQI6 1058 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 NMUR2Q9GZQ4 415 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 UBA5Q9GZZ9 404 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 UBQLN3Q9H347 655 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 DPEP3Q9H4B8 488 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 RAB9BQ9NP90 201 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 WDR35Q9P2L0 1181 aa1.65□□□□□ -2.15
SCN1A-208ENST00000625916 IGKV2-28A0A075B6P5 120 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 IGKV2D-24A0A075B6R9 120 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 URADA6NGE7 173 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 SLC15A5A6NIM6 579 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 A8MX80 341 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 GJB5O95377 273 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 GGPS1O95749 300 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 IGKV2D-28P01615 120 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 CCDC159P0C7I6 412 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 SP9P0CG40 484 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 AKR1B1P15121 316 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 PSMB1P20618 241 aaKnown RBP1.64□□□□□ -2.15
SCN1A-208ENST00000625916 CRKLP46109 303 aaKnown RBP1.64□□□□□ -2.15
SCN1A-208ENST00000625916 MZT1Q08AG7 82 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 MICAQ29983 383 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 ANKRD55Q3KP44 614 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 FBXW8Q8N3Y1 598 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 Q8N9G6 341 aaPredicted RBP1.64□□□□□ -2.15
SCN1A-208ENST00000625916 ZNF540Q8NDQ6 660 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 OR6J1Q8NGC5 347 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 GPR148Q8TDV2 347 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 ADAMTS16Q8TE57 1224 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 SRSF12Q8WXF0 261 aaKnown RBP1.64□□□□□ -2.15
SCN1A-208ENST00000625916 MRPS27Q92552 414 aaKnown RBP1.64□□□□□ -2.15
SCN1A-208ENST00000625916 RMDN1Q96DB5 314 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 RMDN2Q96LZ7 410 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 TTYH2Q9BSA4 534 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 KATNB1Q9BVA0 655 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 PCDHGA1Q9Y5H4 931 aa1.64□□□□□ -2.15
SCN1A-208ENST00000625916 EEF2KO00418 725 aaKnown RBP1.63□□□□□ -2.15
SCN1A-208ENST00000625916 MOCS2O96007 188 aaPredicted RBP1.63□□□□□ -2.15
SCN1A-208ENST00000625916 SBK2P0C263 348 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 SPP1P10451 314 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 TCF4P15884 667 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 IL11P20809 199 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 PSMA3P25788 255 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 CALML3P27482 149 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 EEF1DP29692 281 aaKnown RBP1.63□□□□□ -2.15
SCN1A-208ENST00000625916 FHITP49789 147 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 ARHGDIAP52565 204 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 RPP38P78345 283 aaKnown RBP1.63□□□□□ -2.15
SCN1A-208ENST00000625916 CEACAM7Q14002 265 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 EMC2Q15006 297 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 C6orf136Q5SQH8 315 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 FAM46CQ5VWP2 391 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 KLHL10Q6JEL2 608 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 C11orf57Q6ZUT1 292 aaPredicted RBP1.63□□□□□ -2.15
SCN1A-208ENST00000625916 ERI1Q8IV48 349 aaKnown RBP1.63□□□□□ -2.15
SCN1A-208ENST00000625916 FAM219AQ8IW50 185 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 LINC01555Q8NAE3 123 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 IL22RA2Q969J5 263 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 VIPAS39Q9H9C1 493 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 NTN4Q9HB63 628 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 ZNF331Q9NQX6 463 aaPredicted RBP1.63□□□□□ -2.15
SCN1A-208ENST00000625916 PDRG1Q9NUG6 133 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 PRODH2Q9UF12 536 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 MLXQ9UH92 298 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 CCPG1Q9ULG6 757 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 CA5BQ9Y2D0 317 aa1.63□□□□□ -2.15
SCN1A-208ENST00000625916 IGHV3OR16-12A0A075B7B8 117 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 B4DXG7 233 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 P4HA2O15460 535 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 SERF1AO75920 110 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 ADRB2P07550 413 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 LAMP1P11279 417 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 ZNF44P15621 663 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 HNRNPA2B1P22626 353 aaKnown RBP1.62□□□□□ -2.15
SCN1A-208ENST00000625916 ACKR3P25106 362 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 EFNA3P52797 238 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 RIPPLY3P57055 190 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 RPS8P62241 208 aaKnown RBP1.62□□□□□ -2.15
SCN1A-208ENST00000625916 CAMK2DQ13557 499 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 COG2Q14746 738 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 SLC17A1Q14916 467 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 IL17AQ16552 155 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 KYNUQ16719 465 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 LBHQ53QV2 105 aaPredicted RBP1.62□□□□□ -2.15
SCN1A-208ENST00000625916 TCP11X2Q5H9J9 407 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 GPR157Q5UAW9 335 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 ZNF691Q5VV52 312 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 ZNF776Q68DI1 518 aaPredicted RBP1.62□□□□□ -2.15
SCN1A-208ENST00000625916 PPP1R21Q6ZMI0 780 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 CHST3Q7LGC8 479 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 ADCK2Q7Z695 626 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 CACUL1Q86Y37 369 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 OR1K1Q8NGR3 316 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 NCOA7Q8NI08 942 aa1.62□□□□□ -2.15
SCN1A-208ENST00000625916 SNRNP40Q96DI7 357 aaKnown RBP1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms