RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ARL8BQ9NVJ2 186 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 MAP10Q9P2G4 905 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 TRIM33Q9UPN9 1127 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 NAALAD2Q9Y3Q0 740 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 PCDHGA11Q9Y5H2 935 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 PCDHGA10Q9Y5H3 936 aa11.89□□□□□ -0.51
PNKP-217ENST00000625216 DYTNA2CJ06 578 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 CAPN14A8MX76 684 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 NPIPB8E9PQR5 432 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 UBDO15205 165 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 RGS14O43566 566 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 GALR3O60755 368 aaPredicted RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 KLHL18O94889 574 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 ETHE1O95571 254 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 ALOX12P18054 663 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 GSTM2P28161 218 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 SOX11P35716 441 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 TSFMP43897 325 aaKnown RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 ERVK-8P63133 956 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 SNRPNP63162 240 aaKnown RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 RPL38P63173 70 aaKnown RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 EEF1A2Q05639 463 aaKnown RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 ZNF33BQ06732 778 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 SRSF1Q07955 248 aaKnown RBP eCLIP11.88□□□□□ -0.51
PNKP-217ENST00000625216 CSTF3Q12996 717 aaKnown RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 KLF10Q13118 480 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 ZNF169Q14929 603 aaPredicted RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 PCOLCEQ15113 449 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 MINDY4Q4G0A6 757 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 ATP6AP1LQ52LC2 224 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 PRR30Q53SZ7 412 aaPredicted RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 FAAH2Q6GMR7 532 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 RPUSD3Q6P087 351 aaKnown RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 LINC00696Q6ZRV3 163 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 ABHD13Q7L211 337 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 PRSS41Q7RTY9 318 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 CPEB2Q7Z5Q1 589 aaKnown RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 PDSS2Q86YH6 399 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.88□□□□□ -0.51
PNKP-217ENST00000625216 CPSF7Q8N684 471 aaKnown RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 PLPP5Q8NEB5 264 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 TTLQ8NG68 377 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 HUS1BQ8NHY5 278 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 ZCCHC10Q8TBK6 192 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 HAS2Q92819 552 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 PPP3R2Q96LZ3 170 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 MTERF1Q99551 399 aaKnown RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 C1orf50Q9BV19 199 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 PITHD1Q9GZP4 211 aaPredicted RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 LRTM1Q9HBL6 345 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 DMRT3Q9NQL9 472 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 PFDN4Q9NQP4 134 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 ASF1BQ9NVP2 202 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 AIG1Q9NVV5 245 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 HCN3Q9P1Z3 774 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 POLR3HQ9Y535 204 aaPredicted RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 CAPN7Q9Y6W3 813 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 TNRC6AQ8NDV7 1962 aaKnown RBP11.88□□□□□ -0.51
PNKP-217ENST00000625216 COL12A1Q99715 3063 aa11.88□□□□□ -0.51
PNKP-217ENST00000625216 CCDC88CQ9P219 2028 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 MAGEB17A8MXT2 336 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 RDH16O75452 317 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 JRKO75564 520 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 RSL1D1O76021 490 aaKnown RBP11.87□□□□□ -0.51
PNKP-217ENST00000625216 CBX6O95503 412 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 SERPIND1P05546 499 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 T-ENOLP0DO92 83 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 HSD3B1P14060 373 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 PRPH2P23942 346 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 HSD3B2P26439 372 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 PIK3R1P27986 724 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 UQCRFS1P47985 274 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 ATP4BP51164 291 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 DIO3P55073 304 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 RPS13P62277 151 aaKnown RBP11.87□□□□□ -0.51
PNKP-217ENST00000625216 BNIP1Q12981 228 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 SQLEQ14534 574 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 RBBP5Q15291 538 aaKnown RBP11.87□□□□□ -0.51
PNKP-217ENST00000625216 HIST2H2ACQ16777 129 aaPredicted RBP11.87□□□□□ -0.51
PNKP-217ENST00000625216 IMPG1Q17R60 797 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 AP5B1Q2VPB7 878 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 MFSD4BQ5TF39 518 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 PLAG1Q6DJT9 500 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 HIST2H2AA3Q6FI13 130 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 TMIGD1Q6UXZ0 262 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 CCDC121Q6ZUS5 278 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 SPATA19Q7Z5L4 167 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 HOMEZQ8IX15 550 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 KRT78Q8N1N4 520 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 GBP7Q8N8V2 638 aaPredicted RBP11.87□□□□□ -0.51
PNKP-217ENST00000625216 ANKRD53Q8N9V6 530 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 FNDC5Q8NAU1 212 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 BRIX1Q8TDN6 353 aaKnown RBP11.87□□□□□ -0.51
PNKP-217ENST00000625216 TBC1D20Q96BZ9 403 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 REPS1Q96D71 796 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 APIPQ96GX9 242 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 SLC6A16Q9GZN6 736 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 RNF32Q9H0A6 362 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 NT5DC2Q9H857 520 aa11.87□□□□□ -0.51
PNKP-217ENST00000625216 PTGFRNQ9P2B2 879 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms