RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 RAD51CO43502 376 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 PRKNO60260 465 aaPredicted RBP11.03□□□□□ -0.64
UPF3B-204ENST00000619445 HCN1O60741 890 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 PRAMEF4O60810 478 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 WDR1O75083 606 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 LDB3O75112 727 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 GLSO94925 669 aaPredicted RBP11.03□□□□□ -0.64
UPF3B-204ENST00000619445 TGFB1P01137 390 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 IGHG3P01860 377 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 EPORP19235 508 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 GALNSP34059 522 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 MAGEA4P43358 317 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 KIR3DL1P43629 444 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 PLTPP55058 493 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 PIGGQ5H8A4 983 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 PRAMEF9Q5VWM5 478 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ZNF793Q6ZN11 406 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 UBE3DQ7Z6J8 389 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 GPR180Q86V85 440 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ST13P4Q8IZP2 240 aaPredicted RBP11.03□□□□□ -0.64
UPF3B-204ENST00000619445 CLYBLQ8N0X4 340 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 OR52N2Q8NGI0 321 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 OR5M3Q8NGP4 307 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ESAMQ96AP7 390 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 SARAFQ96BY9 339 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 SENP5Q96HI0 755 aaPredicted RBP11.03□□□□□ -0.64
UPF3B-204ENST00000619445 FBXL20Q96IG2 436 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 SCYL1Q96KG9 808 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 SMC6Q96SB8 1091 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 DEPPQ9NTK1 212 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 LYARQ9NX58 379 aaKnown RBP11.03□□□□□ -0.64
UPF3B-204ENST00000619445 QPCTLQ9NXS2 382 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 CNIH4Q9P003 139 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 BOKQ9UMX3 212 aaPredicted RBP11.03□□□□□ -0.64
UPF3B-204ENST00000619445 PCDHGB3Q9Y5G1 929 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 HCFC1P51610 2035 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 EML6Q6ZMW3 1958 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 IQANK1A0A1B0GTG1 560 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 A0A1B0GVC2 190 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 OR6C76A6NM76 312 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 CAPN14A8MX76 684 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 H0YIV9 168 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 C19orf84I3L1E1 186 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 AQP7O14520 342 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 PIAS1O75925 651 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 C1QAP02745 245 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 GFAPP14136 432 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 GABRA1P14867 456 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ALOX15P16050 662 aaPredicted RBP11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ACVR2AP27037 513 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 SERPINB3P29508 390 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 PHBP35232 272 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 PEX19P40855 299 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ALDH18A1P54886 795 aaKnown RBP11.03□□□□□ -0.64
UPF3B-204ENST00000619445 GPX6P59796 221 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 TNFRSF17Q02223 184 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 TLE4Q04727 773 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 SLAMF1Q13291 335 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 CUL3Q13618 768 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 SLC10A1Q14973 349 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ACAP2Q15057 778 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 GXYLT1Q4G148 440 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 FBXO48Q5FWF7 155 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 WLSQ5T9L3 541 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 SLC22A10Q63ZE4 541 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ADNP2Q6IQ32 1131 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 B3GNT6Q6ZMB0 384 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 SLC29A4Q7RTT9 530 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 CCDC25Q86WR0 208 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 HUS1BQ8NHY5 278 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 FBXO25Q8TCJ0 367 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ZNF721Q8TF20 911 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ANKRD9Q96BM1 317 aaPredicted RBP11.03□□□□□ -0.64
UPF3B-204ENST00000619445 TSPYL1Q9H0U9 437 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 DEFB127Q9H1M4 99 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 ACTR8Q9H981 624 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 B4GALT7Q9UBV7 327 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 KCNN3Q9UGI6 736 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 TMCO1Q9UM00 188 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 RNF6Q9Y252 685 aa11.03□□□□□ -0.64
UPF3B-204ENST00000619445 HIVEP1P15822 2718 aa11.02□□□□□ -0.64
UPF3B-204ENST00000619445 FAM166BA8MTA8 275 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 NPIPA2E9PIF3 369 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 NPIPA3F8WFD2 350 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 UBXN8O00124 270 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 RTCAO00442 366 aaKnown RBP11.02□□□□□ -0.65
UPF3B-204ENST00000619445 FGF17O60258 216 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 OR10H2O60403 315 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 PDE9AO76083 593 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 GPR75O95800 540 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 IGKV3-11P04433 115 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 IGFBP2P18065 325 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 CASQ1P31415 396 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 MAN2A2P49641 1150 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 RIPPLY3P57055 190 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 PMPCAQ10713 525 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 ASPHQ12797 758 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 SETDB1Q15047 1291 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 CDSNQ15517 529 aa11.02□□□□□ -0.65
UPF3B-204ENST00000619445 SPRED3Q2MJR0 410 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms