RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CA5BP1Q8WTZ4 195 aa17.62■□□□□ 0.41
CDX1-202ENST00000616154 CCT6BQ92526 530 aa17.62■□□□□ 0.41
CDX1-202ENST00000616154 UBE2E3Q969T4 207 aa17.62■□□□□ 0.41
CDX1-202ENST00000616154 MRRFQ96E11 262 aaKnown RBP17.62■□□□□ 0.41
CDX1-202ENST00000616154 TREX2Q9BQ50 279 aaPredicted RBP17.62■□□□□ 0.41
CDX1-202ENST00000616154 MS4A8Q9BY19 250 aa17.62■□□□□ 0.41
CDX1-202ENST00000616154 ADAP2Q9NPF8 381 aa17.62■□□□□ 0.41
CDX1-202ENST00000616154 TIMMDC1Q9NPL8 285 aa17.62■□□□□ 0.41
CDX1-202ENST00000616154 PLSCR2Q9NRY7 297 aa17.62■□□□□ 0.41
CDX1-202ENST00000616154 COQ3Q9NZJ6 369 aa17.62■□□□□ 0.41
CDX1-202ENST00000616154 MRPS33Q9Y291 106 aaKnown RBP17.62■□□□□ 0.41
CDX1-202ENST00000616154 YARS2Q9Y2Z4 477 aaKnown RBP17.62■□□□□ 0.41
CDX1-202ENST00000616154 INTS1Q8N201 2190 aaKnown RBP17.62■□□□□ 0.41
CDX1-202ENST00000616154 SYNDIG1LA6NDD5 238 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 ZFAND5O76080 213 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 SCELO95171 688 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 COL6A2P12110 1019 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 EPB42P16452 691 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 SLC13A2Q13183 592 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 GRHL2Q6ISB3 625 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 KLC3Q6P597 504 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 TIFABQ6ZNK6 161 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 TAOK1Q7L7X3 1001 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 IKBKGQ9Y6K9 419 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 EML6Q6ZMW3 1958 aa17.61■□□□□ 0.41
CDX1-202ENST00000616154 PRKNO60260 465 aaPredicted RBP17.6■□□□□ 0.41
CDX1-202ENST00000616154 CDC40O60508 579 aaKnown RBP eCLIP17.6■□□□□ 0.41
CDX1-202ENST00000616154 UGDHO60701 494 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 KRT38O76015 456 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 CAPN3P20807 821 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 KRTAP10-9P60411 292 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 GPR85P60893 370 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 ELAVL1Q15717 326 aaKnown RBP17.6■□□□□ 0.41
CDX1-202ENST00000616154 HIST2H2ACQ16777 129 aaPredicted RBP17.6■□□□□ 0.41
CDX1-202ENST00000616154 HIST2H2AA3Q6FI13 130 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 MED27Q6P2C8 311 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 ARHGAP11AQ6P4F7 1023 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 TRIM40Q6P9F5 258 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 UBE3DQ7Z6J8 389 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 PLD6Q8N2A8 252 aaKnown RBP17.6■□□□□ 0.41
CDX1-202ENST00000616154 MARVELD2Q8N4S9 558 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 FAM47BQ8NA70 645 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 SRFBP1Q8NEF9 429 aaKnown RBP17.6■□□□□ 0.41
CDX1-202ENST00000616154 OR7G3Q8NG95 312 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 CHTF18Q8WVB6 975 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 MTBPQ96DY7 904 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 PGM2Q96G03 612 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 SERINC2Q96SA4 455 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 SH3GL2Q99962 352 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 PRDM7Q9NQW5 492 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 ADGRE2Q9UHX3 823 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 TNPO3Q9Y5L0 923 aaKnown RBP17.6■□□□□ 0.41
CDX1-202ENST00000616154 HRH3Q9Y5N1 445 aa17.6■□□□□ 0.41
CDX1-202ENST00000616154 TMEM200CA6NKL6 621 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 CYR61O00622 381 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 SNRPAP09012 282 aaKnown RBP17.59■□□□□ 0.41
CDX1-202ENST00000616154 SLCO1A2P46721 670 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 PLA2G16P53816 162 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 MTTPP55157 894 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 LIM2P55344 173 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 TGM3Q08188 693 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 RCN2Q14257 317 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 PFKFB4Q16877 469 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 TSNAXIP1Q2TAA8 658 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 KRT71Q3SY84 523 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 TMEM35AQ53FP2 167 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 CEP85LQ5SZL2 805 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 LIPJQ5W064 366 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 TMEM211Q6ICI0 200 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 MEX3BQ6ZN04 569 aaKnown RBP17.59■□□□□ 0.41
CDX1-202ENST00000616154 TMEM132CQ8N3T6 1108 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 PSD4Q8NDX1 1056 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 OR52N2Q8NGI0 321 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 ASB5Q8WWX0 329 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 KCNC2Q96PR1 638 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 CSF3RQ99062 836 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 ROGDIQ9GZN7 287 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 TP63Q9H3D4 680 aaPredicted RBP17.59■□□□□ 0.41
CDX1-202ENST00000616154 DEPPQ9NTK1 212 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 KCMF1Q9P0J7 381 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 TMCO1Q9UM00 188 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 DAPP1Q9UN19 280 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 ERVK-11Q9UQG0 969 aa17.59■□□□□ 0.41
CDX1-202ENST00000616154 MED13LQ71F56 2210 aa17.58■□□□□ 0.41
CDX1-202ENST00000616154 IQANK1A0A1B0GTG1 560 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 A8MVJ9 347 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 CTNSO60931 367 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 OR2J2O76002 312 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 RBP1P09455 135 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 GFAPP14136 432 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 CERS1P27544 350 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 PIK3CBP42338 1070 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 PIK3CGP48736 1102 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 ARFIP1P53367 373 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 TLE4Q04727 773 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 LGSNQ5TDP6 509 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 C16orf47Q6ZP98 133 aaPredicted RBP17.58■□□□□ 0.4
CDX1-202ENST00000616154 CLNKQ7Z7G1 428 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 TEX9Q8N6V9 391 aa17.58■□□□□ 0.4
CDX1-202ENST00000616154 L3MBTL4Q8NA19 623 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms