RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CLEC9AQ6UXN8 241 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 MBOAT1Q6ZNC8 495 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ZNF662Q6ZS27 426 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 CAPN12Q6ZSI9 719 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 CHSY3Q70JA7 882 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 SLC29A4Q7RTT9 530 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 LRRC8AQ8IWT6 810 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ULK2Q8IYT8 1036 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 TAGAPQ8N103 731 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 PDIK1LQ8N165 341 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 LRRC75A-AS1Q8N1F1 130 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 LRRC25Q8N386 305 aaPredicted RBP5.81□□□□□ -1.48
CUX1-220ENST00000607092 RPRMLQ8N4K4 120 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ANKRD53Q8N9V6 530 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 NEIL3Q8TAT5 605 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 PAQR8Q8TEZ7 354 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 SMPDL3BQ92485 455 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 CCT6BQ92526 530 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 UCN3Q969E3 161 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 PIGTQ969N2 578 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ISL2Q96A47 359 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 LRRC39Q96DD0 335 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 MS4A6EQ96DS6 147 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 SPACA9Q96E40 222 aaPredicted RBP5.81□□□□□ -1.48
CUX1-220ENST00000607092 CERS2Q96G23 380 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 SCYL1Q96KG9 808 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 SIGLEC10Q96LC7 697 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 TSNARE1Q96NA8 513 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 RUNDC3BQ96NL0 473 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 DGAT2Q96PD7 388 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 OR4K3Q96R72 315 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 DESI2Q9BSY9 194 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ALOXE3Q9BYJ1 711 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ZNF703Q9H7S9 590 aaPredicted RBP5.81□□□□□ -1.48
CUX1-220ENST00000607092 POPDC3Q9HBV1 291 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 PPANQ9NQ55 473 aaKnown RBP5.81□□□□□ -1.48
CUX1-220ENST00000607092 DEPPQ9NTK1 212 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 NDRG3Q9UGV2 375 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ADGRE2Q9UHX3 823 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 DAPP1Q9UN19 280 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 SH2B3Q9UQQ2 575 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 EIF3LQ9Y262 564 aaKnown RBP5.81□□□□□ -1.48
CUX1-220ENST00000607092 SLC22A14Q9Y267 594 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 ATG4BQ9Y4P1 393 aa5.81□□□□□ -1.48
CUX1-220ENST00000607092 SONP18583 2426 aaKnown RBP5.81□□□□□ -1.48
CUX1-220ENST00000607092 FN1P02751 2386 aaKnown RBP5.81□□□□□ -1.48
CUX1-220ENST00000607092 VPS13CQ709C8 3753 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 C15orf38-AP3S2A0A0A6YYH1 394 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 IQANK1A0A1B0GTG1 560 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 TCRBV7S3A2A0A539 114 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 CD8B2A6NJW9 211 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 OR6C76A6NM76 312 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 C17orf105B2RV13 164 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 GOLGA8MH3BSY2 632 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 CYR61O00622 381 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 ERN1O75460 977 aaKnown RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 SNX4O95219 450 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 ATE1O95260 518 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 AHSGP02765 367 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 ZNF37AP17032 561 aaPredicted RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 HOXC12P31275 282 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 CEACAM8P31997 349 aaPredicted RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 ADH7P40394 386 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 MSH2P43246 934 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 STT3AP46977 705 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 FNTAP49354 379 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 PLA2G16P53816 162 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 SLC12A2P55011 1212 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 DIO3P55073 304 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 LIM2P55344 173 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 NRG3P56975 720 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 DCAF7P61962 342 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 PPP2R2BQ00005 443 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 GAB1Q13480 694 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 RUNX2Q13950 521 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 FRG1Q14331 258 aaKnown RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 SLBPQ14493 270 aaKnown RBP eCLIP5.8□□□□□ -1.48
CUX1-220ENST00000607092 PCBP2Q15366 365 aaKnown RBP eCLIP5.8□□□□□ -1.482e-6■■■■□ 21.1
CUX1-220ENST00000607092 TRIP13Q15645 432 aaPredicted RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 PPP1R3AQ16821 1122 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 AP5B1Q2VPB7 878 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 ZNF750Q32MQ0 723 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 ACSF3Q4G176 576 aaPredicted RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 XKR6Q5GH73 641 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 NSUN5P2Q63ZY6 315 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 RTL6Q6ICC9 239 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 ABHD17CQ6PCB6 329 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 CCDC137Q6PK04 289 aaKnown RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 SBSNQ6UWP8 590 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 PRSS57Q6UWY2 283 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 SLCO4C1Q6ZQN7 724 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 SYDE1Q6ZW31 735 aaPredicted RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 P3H2Q8IVL5 708 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 RASGEF1CQ8N431 466 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 FAM47BQ8NA70 645 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 SPC24Q8NBT2 197 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 SIMC1Q8NDZ2 872 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 SLC2A12Q8TD20 617 aa5.8□□□□□ -1.48
CUX1-220ENST00000607092 PTPMT1Q8WUK0 201 aaPredicted RBP5.8□□□□□ -1.48
CUX1-220ENST00000607092 NUDT8Q8WV74 236 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms