RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 ATG4BQ9Y4P1 393 aa12.65□□□□□ -0.38
SHKBP1-208ENST00000595726 NPFFR2Q9Y5X5 522 aa12.65□□□□□ -0.38
SHKBP1-208ENST00000595726 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-208ENST00000595726 TCRBV9S1A1TA0A576 114 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 SH3D21A4FU49 640 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 CXorf49A8MYA2 514 aaPredicted RBP12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 C4orf51C9J302 202 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 IL2RAP01589 272 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 C1QAP02745 245 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 P04436 131 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 NPPBP16860 134 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 GRK3P35626 688 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 HNRNPFP52597 415 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 GPX6P59796 221 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 NAE1Q13564 534 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 PWP1Q13610 501 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 BMPR2Q13873 1038 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 ZNF460Q14592 562 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 WHAMMP3Q1A5X7 153 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 AGTRAPQ6RW13 159 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 CA13Q8N1Q1 262 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 TMEM52Q8NDY8 209 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 NEIL3Q8TAT5 605 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 TMEM158Q8WZ71 300 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 VPS39Q96JC1 886 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 DACH2Q96NX9 599 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 FAM129AQ9BZQ8 928 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 SPNS1Q9H2V7 528 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 RHOJQ9H4E5 214 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 C6orf203Q9P0P8 240 aaPredicted RBP12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 IKZF3Q9UKT9 509 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 CLDN16Q9Y5I7 305 aa12.64□□□□□ -0.39
SHKBP1-208ENST00000595726 NCKAP5O14513 1909 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 ESYT3A0FGR9 886 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 FAM159BA6NKW6 160 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 AHRRA9YTQ3 701 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 GOSR1O95249 250 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 SAT1P21673 171 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 TIMP3P35625 211 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 TAS2R39P59534 338 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 SLC7A5Q01650 507 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 TERF2Q15554 542 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 PPP1R3AQ16821 1122 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 ADGRD1Q6QNK2 874 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 SBSNQ6UWP8 590 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 HSDL2Q6YN16 418 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 CYS1Q717R9 158 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 ABHD13Q7L211 337 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 CCDC25Q86WR0 208 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 LACC1Q8IV20 430 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 MAPK1IP1LQ8NDC0 245 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 PPP1R14CQ8TAE6 165 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 SMPDL3BQ92485 455 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 CDKL2Q92772 493 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 PDLIM5Q96HC4 596 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 LRRC1Q9BTT6 524 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 SGPP1Q9BX95 441 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 PCBD2Q9H0N5 130 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 ZNF703Q9H7S9 590 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 UBTD1Q9HAC8 227 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 JKAMPQ9P055 326 aa12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 EIF3LQ9Y262 564 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-208ENST00000595726 C15orf38-AP3S2A0A0A6YYH1 394 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 CASKO14936 926 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 SIAH2O43255 324 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 ENO2P09104 434 aaPredicted RBP12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 GSTA2P09210 222 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 HIST1H2AGP0C0S8 130 aaPredicted RBP12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 HIST1H2ADP20671 130 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 CCND1P24385 295 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 CTSSP25774 331 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 CCR8P51685 355 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 NR1H2P55055 460 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 AP1S2P56377 157 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 SKP1P63208 163 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 ILF2Q12905 390 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 RUNX2Q13950 521 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 C10orf62Q5T681 223 aaPredicted RBP12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 PRAMEF20Q5VT98 475 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 PODNL1Q6PEZ8 512 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 LCTLQ6UWM7 567 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 C3orf62Q6ZUJ4 267 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 CLNKQ7Z7G1 428 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 LUZP2Q86TE4 346 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 SCUBE1Q8IWY4 988 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 NKAPQ8N5F7 415 aaKnown RBP12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 GOLM1Q8NBJ4 401 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 OR4K1Q8NGD4 311 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 NT5CQ8TCD5 201 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 ANKRD49Q8WVL7 239 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 PYCR2Q96C36 320 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 HIST1H2AHQ96KK5 128 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 SGCZQ96LD1 299 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 RBBP8Q99708 897 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 TIMP4Q99727 224 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 CCL19Q99731 98 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 CPNE1Q99829 537 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 HIST1H2AJQ99878 128 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 H2AFJQ9BTM1 129 aa12.62□□□□□ -0.39
SHKBP1-208ENST00000595726 RBM24Q9BX46 236 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms