RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 KCTD21Q4G0X4 260 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 RNF44Q7L0R7 432 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 ARMC8Q8IUR7 673 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 ARL10Q8N8L6 244 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 KCT2Q8NC54 265 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 ZNF555Q8NEP9 628 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 OR10Q1Q8NGQ4 319 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 SMIM10Q96HG1 83 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 TRAPPC9Q96Q05 1148 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 GLIPR2Q9H4G4 154 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 C5AR2Q9P296 337 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 FBXW2Q9UKT8 454 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 CES1P1Q9UKY3 287 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 ZNF780BQ9Y6R6 833 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 A0A0J9YVX5 310 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 M0QX08 132 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 MAP3K13O43283 966 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 B3GALT2O43825 422 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 CTSVO60911 334 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 ERAL1O75616 437 aaKnown RBP13.42□□□□□ -0.26
LIG3-205ENST00000585941 STATHP02808 62 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 CELA2BP08218 269 aaPredicted RBP13.42□□□□□ -0.26
LIG3-205ENST00000585941 TLX1P31314 330 aaPredicted RBP13.42□□□□□ -0.26
LIG3-205ENST00000585941 RPL5P46777 297 aaKnown RBP13.42□□□□□ -0.26
LIG3-205ENST00000585941 RPS6KA3P51812 740 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 IST1P53990 364 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 C1orf61Q13536 156 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 TTC33Q6PID6 262 aaPredicted RBP13.42□□□□□ -0.26
LIG3-205ENST00000585941 GALNT10Q86SR1 603 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 UBALD2Q8IYN6 164 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 OR56A1Q8NGH5 318 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 RASSF5Q8WWW0 418 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 GEMIN6Q8WXD5 167 aaKnown RBP13.42□□□□□ -0.26
LIG3-205ENST00000585941 SLC35G5Q96KT7 338 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 EPYCQ99645 322 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 IER2Q9BTL4 223 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.42□□□□□ -0.26
LIG3-205ENST00000585941 RUBCNLQ9H714 662 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 THSD1Q9NS62 852 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 ABCG2Q9UNQ0 655 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 PCDHGB5Q9Y5G0 923 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 PCDHGB3Q9Y5G1 929 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 CEP192Q8TEP8 1941 aa13.42□□□□□ -0.26
LIG3-205ENST00000585941 B4DGG1 531 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 hCG_2039718K7EN88 272 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 PGRMC2O15173 223 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 ADAMDEC1O15204 470 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 GNAO1P09471 354 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 CDH2P19022 906 aaPredicted RBP13.41□□□□□ -0.26
LIG3-205ENST00000585941 PPP2R1BP30154 601 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 FASLGP48023 281 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 KHKP50053 298 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 CASP9P55211 416 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 TUBA4AP68366 448 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 PRR5P85299 388 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 TNFRSF17Q02223 184 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 RPL6Q02878 288 aaKnown RBP13.41□□□□□ -0.26
LIG3-205ENST00000585941 TP53BP2Q13625 1128 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 APOFQ13790 326 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 GNA13Q14344 377 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 LIN52Q52LA3 116 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.41□□□□□ -0.26
LIG3-205ENST00000585941 GPR153Q6NV75 609 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 FAM180BQ6P0A1 224 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 HORMAD2Q8N7B1 307 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 SPPL2AQ8TCT8 520 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 TAMM41Q96BW9 452 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 CNRIP1Q96F85 164 aaPredicted RBP13.41□□□□□ -0.26
LIG3-205ENST00000585941 SEMA6CQ9H3T2 930 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 EPB41L1Q9H4G0 881 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 SYNPO2LQ9H987 977 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 TBC1D17Q9HA65 648 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 C3orf14Q9HBI5 128 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 LYRM4Q9HD34 91 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 TUBA8Q9NY65 449 aaPredicted RBP13.41□□□□□ -0.26
LIG3-205ENST00000585941 P2RX2Q9UBL9 471 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 POMT2Q9UKY4 750 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 DOLKQ9UPQ8 538 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 SAMHD1Q9Y3Z3 626 aaKnown RBP13.41□□□□□ -0.26
LIG3-205ENST00000585941 SPACA6W5XKT8 324 aa13.41□□□□□ -0.26
LIG3-205ENST00000585941 SMIM31A0A1B0GVY4 71 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 PLOD2O00469 737 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 HS6ST1O60243 411 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 C9P02748 559 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 WNT1P04628 370 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 FHP07954 510 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 TFPTP0C1Z6 253 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 LINGO3P0C6S8 592 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 ALOX12P18054 663 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 NR1H2P55055 460 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 HNRNPKP61978 463 aaKnown RBP eCLIP13.4□□□□□ -0.26
LIG3-205ENST00000585941 ZP2Q05996 745 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 IL18R1Q13478 541 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 IQCCQ4KMZ1 466 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 C18orf63Q68DL7 685 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 TNFAIP8L2Q6P589 184 aaPredicted RBP13.4□□□□□ -0.26
LIG3-205ENST00000585941 TSPAN14Q8NG11 270 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 MIPOL1Q8TD10 442 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 SLC38A5Q8WUX1 472 aa13.4□□□□□ -0.26
LIG3-205ENST00000585941 FCRL4Q96PJ5 515 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms