RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 WDR1O75083 606 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 P04436 131 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 CCL3P10147 92 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 STMN1P16949 149 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 SSTR1P30872 391 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 MSH2P43246 934 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 RPL21P46778 160 aaKnown RBP9.79□□□□□ -0.84
RFFL-209ENST00000581265 STT3AP46977 705 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 DNASE1L1P49184 302 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 TBL3Q12788 808 aaKnown RBP9.79□□□□□ -0.84
RFFL-209ENST00000581265 ASPHQ12797 758 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 ZKSCAN8Q15776 578 aaPredicted RBP9.79□□□□□ -0.84
RFFL-209ENST00000581265 AP5B1Q2VPB7 878 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 ZNF791Q3KP31 576 aaPredicted RBP9.79□□□□□ -0.84
RFFL-209ENST00000581265 SLC22A10Q63ZE4 541 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 MYRIPQ8NFW9 859 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 NUBPLQ8TB37 319 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 PYROXD1Q8WU10 500 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 SREK1Q8WXA9 508 aaKnown RBP9.79□□□□□ -0.84
RFFL-209ENST00000581265 CDKL2Q92772 493 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 SARAFQ96BY9 339 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 RBM18Q96H35 190 aaKnown RBP9.79□□□□□ -0.84
RFFL-209ENST00000581265 GPR22Q99680 433 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 RBBP8Q99708 897 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 CPNE1Q99829 537 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 TRIM31Q9BZY9 425 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 SH2D2AQ9NP31 389 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 SEMA4BQ9NPR2 832 aaPredicted RBP9.79□□□□□ -0.84
RFFL-209ENST00000581265 RYDENQ9NUL5 291 aaKnown RBP9.79□□□□□ -0.84
RFFL-209ENST00000581265 MS4A12Q9NXJ0 267 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 TUBA8Q9NY65 449 aaPredicted RBP9.79□□□□□ -0.84
RFFL-209ENST00000581265 CD274Q9NZQ7 290 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 COPS7AQ9UBW8 275 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 ACAD8Q9UKU7 415 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 SNX24Q9Y343 169 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 ATG4BQ9Y4P1 393 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 PCDHGB3Q9Y5G1 929 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 LIPGQ9Y5X9 500 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 SAR1BQ9Y6B6 198 aa9.79□□□□□ -0.84
RFFL-209ENST00000581265 PRRC2AP48634 2157 aaKnown RBP9.78□□□□□ -0.84
RFFL-209ENST00000581265 A0A0G2JNJ9 132 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 ATP6AP2A0A1C7CYW4 349 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 FGF17O60258 216 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 CCNT2O60583 730 aaKnown RBP9.78□□□□□ -0.84
RFFL-209ENST00000581265 ATP6AP2O75787 350 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 TGFB1P01137 390 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 C1QAP02745 245 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 CELA3AP09093 270 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 COX7A2P14406 83 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 CPN2P22792 545 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 SERPINB1P30740 379 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 DNAJA1P31689 397 aaKnown RBP9.78□□□□□ -0.84
RFFL-209ENST00000581265 MAN2A2P49641 1150 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 IST1P53990 364 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 DLX5P56178 289 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 RAB10P61026 200 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 ID2Q02363 134 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 WLSQ5T9L3 541 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 DEPDC1Q5TB30 811 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 KHDRBS2Q5VWX1 349 aaKnown RBP9.78□□□□□ -0.84
RFFL-209ENST00000581265 OR4C11Q6IEV9 310 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 MED27Q6P2C8 311 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 ADGRD1Q6QNK2 874 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 LYPD8Q6UX82 237 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 LRRC70Q7Z2Q7 622 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 ISCA2Q86U28 154 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 LIX1LQ8IVB5 337 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 OR4N5Q8IXE1 308 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 SLC15A4Q8N697 577 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 BBOF1Q8ND07 529 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 LRRN4CLQ8ND94 238 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 OR7G3Q8NG95 312 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 STAG3L4Q8TBR4 150 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 PAQR8Q8TEZ7 354 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 TANKQ92844 425 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 CMTM7Q96FZ5 175 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 KRT12Q99456 494 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 FOXC2Q99958 501 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 PHACTR1Q9C0D0 580 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 RPF2Q9H7B2 306 aaKnown RBP9.78□□□□□ -0.84
RFFL-209ENST00000581265 ACKR4Q9NPB9 350 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 TXNDC16Q9P2K2 825 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 RNF14Q9UBS8 474 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 Q9UFV3 132 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 ADGRE2Q9UHX3 823 aa9.78□□□□□ -0.84
RFFL-209ENST00000581265 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.78□□□□□ -0.84
RFFL-209ENST00000581265 TRGV5A0A0B4J1U4 118 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 TCRBV9S1A1TA0A576 114 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 FAM159BA6NKW6 160 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 FAM47E-STBD1D6RA91 191 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 EIF3HO15372 352 aaKnown RBP eCLIP9.77□□□□□ -0.85
RFFL-209ENST00000581265 DYRK3O43781 588 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 CTAG2O75638 210 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 ZWINTO95229 277 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 S100BP04271 92 aaPredicted RBP9.77□□□□□ -0.85
RFFL-209ENST00000581265 GABRA1P14867 456 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 FOSL1P15407 271 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 PIGAP37287 484 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 GP5P40197 560 aa9.77□□□□□ -0.85
RFFL-209ENST00000581265 ADH7P40394 386 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms