RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 EGFL7Q9UHF1 273 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 UTS2RQ9UKP6 389 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 SLC6A14Q9UN76 642 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 CDC14AQ9UNH5 594 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 FAF1Q9UNN5 650 aaPredicted RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 EXO1Q9UQ84 846 aaKnown RBP7.55□□□□□ -1.2
VPS39-213ENST00000570062 C15orf41Q9Y2V0 281 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 SPTBN4Q9H254 2564 aa7.55□□□□□ -1.2
VPS39-213ENST00000570062 BRWD1Q9NSI6 2320 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PRAMEF33A0A0G2JMD5 474 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 A0A1B0GVT2 93 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 MYO1GB0I1T2 1018 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 H0YIG0 161 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 H3BNX3 289 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 TMPRSS11DO60235 418 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 DPM1O60762 260 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 SH3BGRLO75368 114 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 CREG1O75629 220 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 KCNK5O95279 499 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 C6orf47O95873 294 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 LDLRP01130 860 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 GSNP06396 782 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 ITGA2P17301 1181 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 TYRP1P17643 537 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 CPN2P22792 545 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 KDELR2P33947 212 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 AVPR1BP47901 424 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PPM1FP49593 454 aaPredicted RBP7.54□□□□□ -1.2
VPS39-213ENST00000570062 GZMMP51124 257 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 ARSFP54793 590 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 YBX1P67809 324 aaKnown RBP7.54□□□□□ -1.2
VPS39-213ENST00000570062 HBA1P69905 142 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 HSD11B2P80365 405 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PLIN5Q00G26 463 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 TNFRSF17Q02223 184 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 GRM7Q14831 915 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 MYBPC3Q14896 1274 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 TRIP10Q15642 601 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 DEFB133Q30KQ1 61 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 SPDYE7PQ495Y7 208 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 GCNT6Q5T4J0 391 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 WLSQ5T9L3 541 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 OGFRL1Q5TC84 451 aaPredicted RBP7.54□□□□□ -1.2
VPS39-213ENST00000570062 PRAMEF8Q5VWM4 474 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PRAMEF7Q5VXH5 474 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 ZCCHC12Q6PEW1 402 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 CYP2R1Q6VVX0 501 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 USP53Q70EK8 1073 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 CCDC80Q76M96 950 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 ERMP1Q7Z2K6 904 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PATL1Q86TB9 770 aaKnown RBP7.54□□□□□ -1.2
VPS39-213ENST00000570062 ANKRD46Q86W74 232 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PLD3Q8IV08 490 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 MSRB3Q8IXL7 192 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 DNAJC22Q8N4W6 341 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 ANKFN1Q8N957 763 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 TTC29Q8NA56 475 aaPredicted RBP7.54□□□□□ -1.2
VPS39-213ENST00000570062 FAM156AQ8NDB6 213 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 OR4K14Q8NGD5 310 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 OR8K5Q8NH50 307 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 FIG4Q92562 907 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PMM1Q92871 262 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 EME1Q96AY2 570 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 TBC1D20Q96BZ9 403 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 MIEF2Q96C03 454 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 SDCCAG3Q96C92 435 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 NEURL3Q96EH8 262 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PYURFQ96I23 114 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 ZNF578Q96N58 590 aaPredicted RBP7.54□□□□□ -1.2
VPS39-213ENST00000570062 PELOQ9BRX2 385 aaKnown RBP7.54□□□□□ -1.2
VPS39-213ENST00000570062 INPP5KQ9BT40 448 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 C9orf16Q9BUW7 83 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 FANCEQ9HB96 536 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 LHX9Q9NQ69 397 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 CALML5Q9NZT1 146 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 SEMA5BQ9P283 1151 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 SERTAD3Q9UJW9 196 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PACSIN3Q9UKS6 424 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PADI4Q9UM07 663 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 DAPP1Q9UN19 280 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 AURKCQ9UQB9 309 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 ANGPT4Q9Y264 503 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 BTBD3Q9Y2F9 522 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PCDHGB3Q9Y5G1 929 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 PCDHGA5Q9Y5G8 931 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 SNX11Q9Y5W9 270 aa7.54□□□□□ -1.2
VPS39-213ENST00000570062 C5orf42Q9H799 3197 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 RNF103-CHMP3A0A140T963 221 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 A0A1W2PR48 441 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 TCRBV5S2A0A599 114 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 FITM1A5D6W6 292 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 TTC36A6NLP5 189 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 C5orf58C9J3I9 102 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 RTCAO00442 366 aaKnown RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 PLOD2O00469 737 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 CLDN4O14493 209 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 ASNA1O43681 348 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 GALR3O60755 368 aaPredicted RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 CTSVO60911 334 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 SERPINB7O75635 380 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms