RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 FOLH1Q04609 750 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 TLE1Q04724 770 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 ZNF169Q14929 603 aaPredicted RBP12.14□□□□□ -0.47
CLK3-224ENST00000568605 NDUFAF5Q5TEU4 345 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 C18orf63Q68DL7 685 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 H3F3CQ6NXT2 135 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 Q6ZS92 163 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 EXOC3L1Q86VI1 746 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 ST13P4Q8IZP2 240 aaPredicted RBP12.14□□□□□ -0.47
CLK3-224ENST00000568605 KIRREL3Q8IZU9 778 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 RBMXL3Q8N7X1 1067 aaKnown RBP12.14□□□□□ -0.47
CLK3-224ENST00000568605 MORN4Q8NDC4 146 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 SUN3Q8TAQ9 357 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 DNAJB14Q8TBM8 379 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 ELP5Q8TE02 316 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 PSMF1Q92530 271 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 RBM18Q96H35 190 aaKnown RBP12.14□□□□□ -0.47
CLK3-224ENST00000568605 METTL2AQ96IZ6 378 aaKnown RBP12.14□□□□□ -0.47
CLK3-224ENST00000568605 MECRQ9BV79 373 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 MFRPQ9BY79 579 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 DEFB126Q9BYW3 111 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 ACPTQ9BZG2 426 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 SHCBP1LQ9BZQ2 653 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 KCNK9Q9NPC2 374 aa12.14□□□□□ -0.47
CLK3-224ENST00000568605 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLK3-224ENST00000568605 TEX10Q9NXF1 929 aaPredicted RBP12.14□□□□□ -0.47
CLK3-224ENST00000568605 SVILO95425 2214 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 TRAV17A0A0B4J275 112 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 TRBV11-1A0A0K0K1C0 115 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 A0A1W2PR48 441 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 OR5H15A6NDH6 313 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 TGFBR3LH3BV60 316 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 SLC28A1O00337 649 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 BIRC5O15392 142 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 FGF17O60258 216 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 RSL1D1O76021 490 aaKnown RBP12.13□□□□□ -0.47
CLK3-224ENST00000568605 SORBS2O94875 1100 aaKnown RBP12.13□□□□□ -0.47
CLK3-224ENST00000568605 SNUPNO95149 360 aaKnown RBP12.13□□□□□ -0.47
CLK3-224ENST00000568605 GPR75O95800 540 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 PLA2G2AP14555 144 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 ALOX15P16050 662 aaPredicted RBP12.13□□□□□ -0.47
CLK3-224ENST00000568605 CREB1P16220 341 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 TIA1P31483 386 aaKnown RBP eCLIP12.13□□□□□ -0.47
CLK3-224ENST00000568605 FOXA1P55317 472 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 ID2Q02363 134 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 TBL3Q12788 808 aaKnown RBP12.13□□□□□ -0.47
CLK3-224ENST00000568605 CASP8Q14790 479 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 TNFAIP8L3Q5GJ75 292 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 SPDYAQ5MJ70 313 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 ACER2Q5QJU3 275 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 RNF165Q6ZSG1 346 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 CRLF3Q8IUI8 442 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 NUDCD3Q8IVD9 361 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 HORMAD2Q8N7B1 307 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 NCLNQ969V3 563 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.13□□□□□ -0.47
CLK3-224ENST00000568605 ZBTB20Q9HC78 741 aaPredicted RBP12.13□□□□□ -0.47
CLK3-224ENST00000568605 PFDN4Q9NQP4 134 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 PSME2Q9UL46 239 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 PPIEQ9UNP9 301 aaKnown RBP12.13□□□□□ -0.47
CLK3-224ENST00000568605 FIS1Q9Y3D6 152 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 CLDN16Q9Y5I7 305 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 ZGRF1Q86YA3 2104 aa12.13□□□□□ -0.47
CLK3-224ENST00000568605 J3QKU1 62 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 RGS14O43566 566 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 PRKRAO75569 313 aaKnown RBP12.12□□□□□ -0.47
CLK3-224ENST00000568605 HSPA4LO95757 839 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 ETV4P43268 484 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 CD97P48960 835 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 HMGCS1Q01581 520 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 ZNF763Q0D2J5 394 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 INAQ16352 499 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 SPRED3Q2MJR0 410 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 HHATQ5VTY9 493 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 KANK2Q63ZY3 851 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 CLEC6AQ6EIG7 209 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 GALNT18Q6P9A2 607 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 ZCCHC23Q6ZST2 131 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 TRIM46Q7Z4K8 759 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 ATCAYQ86WG3 371 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 RPS19BP1Q86WX3 136 aaKnown RBP12.12□□□□□ -0.47
CLK3-224ENST00000568605 BEST3Q8N1M1 668 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 KIF2BQ8N4N8 673 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 APCDD1LQ8NCL9 501 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 NFAM1Q8NET5 270 aaPredicted RBP12.12□□□□□ -0.47
CLK3-224ENST00000568605 OR4K14Q8NGD5 310 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 OR1N1Q8NGS0 311 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 FAM76AQ8TAV0 307 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 SLC2A12Q8TD20 617 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 CHTF18Q8WVB6 975 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 HAS2Q92819 552 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 ANKRD9Q96BM1 317 aaPredicted RBP12.12□□□□□ -0.47
CLK3-224ENST00000568605 KLHL29Q96CT2 875 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 UTP23Q9BRU9 249 aaKnown RBP12.12□□□□□ -0.47
CLK3-224ENST00000568605 OR8D2Q9GZM6 311 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 GIMAP4Q9NUV9 329 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 STMN3Q9NZ72 180 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 PCDHA9Q9Y5H5 950 aa12.12□□□□□ -0.47
CLK3-224ENST00000568605 RP1L1Q8IWN7 2480 aaPredicted RBP12.12□□□□□ -0.47
CLK3-224ENST00000568605 FASNP49327 2511 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms