RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PCDHGA10Q9Y5H3 936 aa19.23■□□□□ 0.67
CLN3-230ENST00000568076 SNRNP200O75643 2136 aaKnown RBP19.22■□□□□ 0.67
CLN3-230ENST00000568076 GLOD5A6NK44 160 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 ERI3O43414 337 aaKnown RBP19.22■□□□□ 0.67
CLN3-230ENST00000568076 HOXC4P09017 264 aaPredicted RBP19.22■□□□□ 0.67
CLN3-230ENST00000568076 DRD2P14416 443 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 DDX5P17844 614 aaKnown RBP19.22■□□□□ 0.67
CLN3-230ENST00000568076 ACSL1P33121 698 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 KRT20P35900 424 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 LTBRP36941 435 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 CCT3P49368 545 aaKnown RBP19.22■□□□□ 0.67
CLN3-230ENST00000568076 NPTX1Q15818 432 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 ABHD17CQ6PCB6 329 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 GPR32P1Q8NGA4 272 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 OR9Q2Q8NGE9 314 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 CCL4L1Q8NHW4 92 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 FAR1Q8WVX9 515 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 AMDHD1Q96NU7 426 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 SARGQ9BW04 601 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 CLDND1Q9NY35 253 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 SCML1Q9UN30 329 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 TPRKBQ9Y3C4 175 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 ASB4Q9Y574 426 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 ENPP4Q9Y6X5 453 aa19.22■□□□□ 0.67
CLN3-230ENST00000568076 C5orf58C9J3I9 102 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 MAN2B1O00754 1011 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 PCDH17O14917 1159 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 HIST1H1TP22492 207 aaPredicted RBP19.21■□□□□ 0.67
CLN3-230ENST00000568076 AHRP35869 848 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 SLAMF1Q13291 335 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 TP53BP2Q13625 1128 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 GANABQ14697 944 aaKnown RBP19.21■□□□□ 0.67
CLN3-230ENST00000568076 TMEM31Q5JXX7 168 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 MRM1Q6IN84 353 aaKnown RBP19.21■□□□□ 0.67
CLN3-230ENST00000568076 ZNF425Q6IV72 752 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 USP30Q70CQ3 517 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 BMFQ96LC9 184 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 SLC35C2Q9NQQ7 365 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 PCDHGA4Q9Y5G9 962 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 PIAS3Q9Y6X2 628 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 EYSQ5T1H1 3165 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 A0A1W2PR48 441 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 PRAMEF27A3QJZ7 478 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 PGRMC2O15173 223 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 MFN2O95140 757 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 VIPP01282 170 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 ANXA8P13928 327 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 HTR1BP28222 390 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 GSSP48637 474 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 PXNP49023 591 aaPredicted RBP19.21■□□□□ 0.67
CLN3-230ENST00000568076 HMGA2P52926 109 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 TFF2Q03403 129 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 NFATC3Q12968 1075 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 NFATC4Q14934 902 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 SLC9A5Q14940 896 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 PROX2Q3B8N5 592 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 TOR1AIP1Q5JTV8 583 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 RD3Q7Z3Z2 195 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 ACOT4Q8N9L9 421 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 OR4E2Q8NGC2 313 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 FUNDC2Q9BWH2 189 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 EHD3Q9NZN3 535 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 RHCGQ9UBD6 479 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 RNF6Q9Y252 685 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 NCKAP1Q9Y2A7 1128 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 ATG4BQ9Y4P1 393 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 PCDHGA2Q9Y5H1 932 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 HEBP2Q9Y5Z4 205 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 COLEC10Q9Y6Z7 277 aa19.21■□□□□ 0.67
CLN3-230ENST00000568076 FFAR1O14842 300 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 MAN1A2O60476 641 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 NOL3O60936 208 aaKnown RBP19.2■□□□□ 0.66
CLN3-230ENST00000568076 CHRM5P08912 532 aaPredicted RBP19.2■□□□□ 0.66
CLN3-230ENST00000568076 CCNA2P20248 432 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 ATP5A1P25705 553 aaKnown RBP19.2■□□□□ 0.66
CLN3-230ENST00000568076 PTGER1P34995 402 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 SLC19A1P41440 591 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 MAP2K4P45985 399 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 MASP1P48740 699 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 LIM2P55344 173 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 TMEM92Q6UXU6 159 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 SLC16A12Q6ZSM3 486 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 AMIGO1Q86WK6 493 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 OR2L5Q8NG80 312 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 RAB2BQ8WUD1 216 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 TANKQ92844 425 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 TSACCQ96A04 125 aaPredicted RBP19.2■□□□□ 0.66
CLN3-230ENST00000568076 SCN3BQ9NY72 215 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 ZNF624Q9P2J8 865 aaPredicted RBP19.2■□□□□ 0.66
CLN3-230ENST00000568076 APOBEC3BQ9UH17 382 aaKnown RBP19.2■□□□□ 0.66
CLN3-230ENST00000568076 COL4A2P08572 1712 aa19.2■□□□□ 0.66
CLN3-230ENST00000568076 ZNF99A8MXY4 864 aaPredicted RBP19.19■□□□□ 0.66
CLN3-230ENST00000568076 ISM1B1AKI9 464 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 SH3BP5O60239 455 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 FOXD2O60548 495 aaPredicted RBP19.19■□□□□ 0.66
CLN3-230ENST00000568076 SEMA7AO75326 666 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 MT-ND2P03891 347 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 IFNW1P05000 195 aa19.19■□□□□ 0.66
CLN3-230ENST00000568076 ZNF182P17025 639 aaPredicted RBP19.19■□□□□ 0.66
CLN3-230ENST00000568076 RHCEP18577 417 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms