RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 OR4C11Q6IEV9 310 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 GRHL2Q6ISB3 625 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 TRILQ7L0X0 811 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 CMC1Q7Z7K0 106 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 CTAGE3PQ8IX95 158 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 FAM109AQ8N4B1 249 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 TMEM251Q8N6I4 163 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 PPM1NQ8N819 430 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 SREK1Q8WXA9 508 aaKnown RBP15.83■□□□□ 0.12
CLN3-216ENST00000565316 OR51B5Q9H339 312 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 PNPLA3Q9NST1 481 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 SACM1LQ9NTJ5 587 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 MS4A12Q9NXJ0 267 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 OPTCQ9UBM4 332 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 COPS7AQ9UBW8 275 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 PYCARDQ9ULZ3 195 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 C2CD3Q4AC94 2353 aa15.83■□□□□ 0.12
CLN3-216ENST00000565316 UBXN8O00124 270 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 BCKDKO14874 412 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 SH3BGRLO75368 114 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 LTA4HP09960 611 aaKnown RBP15.82■□□□□ 0.12
CLN3-216ENST00000565316 CCL3P10147 92 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 COX7A2P14406 83 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 MSX1P28360 303 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 ARFIP1P53367 373 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 CAV1Q03135 178 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 SLAMF1Q13291 335 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 NAB1Q13506 487 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 ZNF791Q3KP31 576 aaPredicted RBP15.82■□□□□ 0.12
CLN3-216ENST00000565316 TBC1D1Q86TI0 1168 aaPredicted RBP15.82■□□□□ 0.12
CLN3-216ENST00000565316 CDH24Q86UP0 819 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 CCDC71Q8IV32 467 aaPredicted RBP15.82■□□□□ 0.12
CLN3-216ENST00000565316 OR4N5Q8IXE1 308 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 ZCCHC7Q8N3Z6 543 aaKnown RBP15.82■□□□□ 0.12
CLN3-216ENST00000565316 TANKQ92844 425 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 RGMAQ96B86 450 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 SMC6Q96SB8 1091 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 SORBS1Q9BX66 1292 aaKnown RBP15.82■□□□□ 0.12
CLN3-216ENST00000565316 UCK2Q9BZX2 261 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 KCNJ16Q9NPI9 418 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 LIPGQ9Y5X9 500 aa15.82■□□□□ 0.12
CLN3-216ENST00000565316 CCDC189A1A4V9 331 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 NKX2-6A6NCS4 301 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 FOXO6A8MYZ6 492 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 SUPT3HB4E1H0 165 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 SAP18O00422 153 aaKnown RBP15.81■□□□□ 0.12
CLN3-216ENST00000565316 AQP7O14520 342 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 SUSD5O60279 629 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 SUPT3HO75486 399 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 NADKO95544 446 aaPredicted RBP15.81■□□□□ 0.12
CLN3-216ENST00000565316 P04436 131 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 EPB42P16452 691 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 ACVR2AP27037 513 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 MAGEA4P43358 317 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 MAGEA5P43359 124 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 PLTPP55058 493 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 GUCY2DQ02846 1103 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 ASPHQ12797 758 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 SLMAPQ14BN4 828 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 ADGRD1Q6QNK2 874 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 LYPD8Q6UX82 237 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 DGAT2L6Q6ZPD8 337 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 FAM47EQ6ZV65 393 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 RAPH1Q70E73 1250 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 CCDC91Q7Z6B0 441 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 GPR180Q86V85 440 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 C9orf40Q8IXQ3 194 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 DMRTC2Q8IXT2 367 aaPredicted RBP15.81■□□□□ 0.12
CLN3-216ENST00000565316 CENPLQ8N0S6 344 aaPredicted RBP15.81■□□□□ 0.12
CLN3-216ENST00000565316 RNF175Q8N4F7 328 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 SLC15A4Q8N697 577 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 OR5M3Q8NGP4 307 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 HUS1BQ8NHY5 278 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 RHEBL1Q8TAI7 183 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 FBXO25Q8TCJ0 367 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 FBXL20Q96IG2 436 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 DGAT2Q96PD7 388 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 RPF2Q9H7B2 306 aaKnown RBP15.81■□□□□ 0.12
CLN3-216ENST00000565316 DMRT3Q9NQL9 472 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 RYDENQ9NUL5 291 aaKnown RBP15.81■□□□□ 0.12
CLN3-216ENST00000565316 TUBA8Q9NY65 449 aaPredicted RBP15.81■□□□□ 0.12
CLN3-216ENST00000565316 ITGB1BP2Q9UKP3 347 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 ATG4BQ9Y4P1 393 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 FAM215AQ9Y5M1 114 aa15.81■□□□□ 0.12
CLN3-216ENST00000565316 MAP1AP78559 2803 aaPredicted RBP15.8■□□□□ 0.12
CLN3-216ENST00000565316 PHF3Q92576 2039 aaKnown RBP15.8■□□□□ 0.12
CLN3-216ENST00000565316 FAM90A27PA6NNH2 459 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 HRKO00198 91 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 PLPP1O14494 284 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 STX2P32856 288 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 DNASE1L1P49184 302 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 TNFRSF17Q02223 184 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 FOLH1Q04609 750 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 SLC10A1Q14973 349 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 RTL6Q6ICC9 239 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 ZDHHC24Q6UX98 284 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 SPNS3Q6ZMD2 512 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 TEX9Q8N6V9 391 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 OR5M9Q8NGP3 310 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 FBF1Q8TES7 1133 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms