RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 OR9A2Q8NGT5 310 aa8.78□□□□□ -1
VPS39-205ENST00000562258 SNIP1Q8TAD8 396 aaKnown RBP8.78□□□□□ -1
VPS39-205ENST00000562258 C3orf30Q96M34 536 aa8.78□□□□□ -1
VPS39-205ENST00000562258 EPHX3Q9H6B9 360 aa8.78□□□□□ -1
VPS39-205ENST00000562258 FAM120CQ9NX05 1096 aaKnown RBP8.78□□□□□ -1
VPS39-205ENST00000562258 GPRC5BQ9NZH0 403 aa8.78□□□□□ -1
VPS39-205ENST00000562258 PDP1Q9P0J1 537 aaPredicted RBP8.78□□□□□ -1
VPS39-205ENST00000562258 NSG1A0A0A6YYJ2 146 aa8.78□□□□□ -1
VPS39-205ENST00000562258 TRBC2A0A5B9 178 aa8.78□□□□□ -1
VPS39-205ENST00000562258 DCDC2BA2VCK2 349 aa8.78□□□□□ -1
VPS39-205ENST00000562258 ANHXE9PGG2 379 aa8.78□□□□□ -1
VPS39-205ENST00000562258 TMX2-CTNND1H3BSU7 103 aa8.78□□□□□ -1
VPS39-205ENST00000562258 SRPX2O60687 465 aaPredicted RBP8.78□□□□□ -1
VPS39-205ENST00000562258 GLB1P16278 677 aa8.78□□□□□ -1
VPS39-205ENST00000562258 MC3RP41968 323 aa8.78□□□□□ -1
VPS39-205ENST00000562258 SLC18A1P54219 525 aa8.78□□□□□ -1
VPS39-205ENST00000562258 POLE2P56282 527 aa8.78□□□□□ -1
VPS39-205ENST00000562258 SMIM11AP58511 58 aa8.78□□□□□ -1
VPS39-205ENST00000562258 PCDH1Q08174 1060 aa8.78□□□□□ -1
VPS39-205ENST00000562258 RANBP3LQ86VV4 465 aaPredicted RBP8.78□□□□□ -1
VPS39-205ENST00000562258 OR51Q1Q8NH59 317 aa8.78□□□□□ -1
VPS39-205ENST00000562258 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.78□□□□□ -12e-11■■■■□ 23.5
VPS39-205ENST00000562258 TMEM185BQ9H7F4 350 aa8.78□□□□□ -1
VPS39-205ENST00000562258 PRODH2Q9UF12 536 aa8.78□□□□□ -1
VPS39-205ENST00000562258 PRPF19Q9UMS4 504 aaKnown RBP8.78□□□□□ -1
VPS39-205ENST00000562258 CPSF4LA6NMK7 179 aaKnown RBP8.77□□□□□ -1
VPS39-205ENST00000562258 TNFRSF11BO00300 401 aa8.77□□□□□ -1
VPS39-205ENST00000562258 RPS17P08708 135 aaKnown RBP8.77□□□□□ -1
VPS39-205ENST00000562258 POU2F2P09086 479 aa8.77□□□□□ -1
VPS39-205ENST00000562258 GSK3BP49841 420 aa8.77□□□□□ -1
VPS39-205ENST00000562258 CCL11P51671 97 aa8.77□□□□□ -1
VPS39-205ENST00000562258 POU6F2P78424 691 aaPredicted RBP8.77□□□□□ -1
VPS39-205ENST00000562258 CCL7P80098 99 aa8.77□□□□□ -1
VPS39-205ENST00000562258 CKAP5Q14008 2032 aa8.77□□□□□ -1
VPS39-205ENST00000562258 LAPTM4AQ15012 233 aa8.77□□□□□ -1
VPS39-205ENST00000562258 SYT16Q17RD7 645 aa8.77□□□□□ -1
VPS39-205ENST00000562258 VWA2Q5GFL6 755 aa8.77□□□□□ -1
VPS39-205ENST00000562258 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.77□□□□□ -1
VPS39-205ENST00000562258 DCST1Q5T197 706 aa8.77□□□□□ -1
VPS39-205ENST00000562258 ZDHHC21Q8IVQ6 265 aa8.77□□□□□ -1
VPS39-205ENST00000562258 ZNF527Q8NB42 609 aa8.77□□□□□ -1
VPS39-205ENST00000562258 PDPRQ8NCN5 879 aa8.77□□□□□ -1
VPS39-205ENST00000562258 OR56A1Q8NGH5 318 aa8.77□□□□□ -1
VPS39-205ENST00000562258 TEX101Q9BY14 249 aa8.77□□□□□ -1
VPS39-205ENST00000562258 KLHL4Q9C0H6 718 aa8.77□□□□□ -1
VPS39-205ENST00000562258 P2RY12Q9H244 342 aa8.77□□□□□ -1
VPS39-205ENST00000562258 MCCC2Q9HCC0 563 aa8.77□□□□□ -1
VPS39-205ENST00000562258 CSTAP01040 98 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 ETFAP13804 333 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 HSD3B1P14060 373 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 NME1P15531 152 aaKnown RBP8.77□□□□□ -1.01
VPS39-205ENST00000562258 HSD3B2P26439 372 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 TMED10P49755 219 aaKnown RBP8.77□□□□□ -1.01
VPS39-205ENST00000562258 ARG2P78540 354 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 GPLD1P80108 840 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 SRYQ05066 204 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 BCL7AQ4VC05 210 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 TREML1Q86YW5 311 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 TP53I13Q8NBR0 393 aaPredicted RBP8.77□□□□□ -1.01
VPS39-205ENST00000562258 MAL2Q969L2 176 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 PHF21AQ96BD5 680 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 MMADHCQ9H3L0 296 aaPredicted RBP8.77□□□□□ -1.01
VPS39-205ENST00000562258 LRRN3Q9H3W5 708 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 ACTL8Q9H568 366 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 PTGES2Q9H7Z7 377 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 SLAMF7Q9NQ25 335 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 RPH3AQ9Y2J0 694 aaPredicted RBP8.77□□□□□ -1.01
VPS39-205ENST00000562258 ACACBO00763 2458 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 CAPN14A8MX76 684 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 TP53I11O14683 189 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 PLD2O14939 933 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 CLEC3AO75596 197 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 PSMG1O95456 288 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 CSF2P04141 144 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 TCF3P15923 654 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 XRCC1P18887 633 aaPredicted RBP8.77□□□□□ -1.01
VPS39-205ENST00000562258 CNR2P34972 360 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 ETV4P43268 484 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 CSNK1G2P78368 415 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 ZNF33BQ06732 778 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 TRIM25Q14258 630 aaKnown RBP8.77□□□□□ -1.01
VPS39-205ENST00000562258 IFI44LQ53G44 452 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 CLEC12AQ5QGZ9 265 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 KIAA1614Q5VZ46 1190 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 ADNP2Q6IQ32 1131 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 IL20RBQ6UXL0 311 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 HSDL2Q6YN16 418 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 SLCO4C1Q6ZQN7 724 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 LARP4Q71RC2 724 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS39-205ENST00000562258 BNIPLQ7Z465 357 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 GPAT4Q86UL3 456 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 BPIFB6Q8NFQ5 453 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 GAL3ST3Q96A11 431 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 ZNF354BQ96LW1 612 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 ADOQ96SZ5 270 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 C9orf16Q9BUW7 83 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 SPRTNQ9H040 489 aaPredicted RBP8.77□□□□□ -1.01
VPS39-205ENST00000562258 PELI2Q9HAT8 420 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 SEMA4GQ9NTN9 838 aa8.77□□□□□ -1.01
VPS39-205ENST00000562258 A0A0C4DFX4 3053 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms