RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 C2orf54Q08AI8 447 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 FOXO1Q12778 655 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 ASPHQ12797 758 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 CALCOCO2Q13137 446 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 SLAMF1Q13291 335 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 LAPTM5Q13571 262 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 SERTAD2Q14140 314 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 TRADDQ15628 312 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 HIST2H2ACQ16777 129 aaPredicted RBP10.76□□□□□ -0.69
USP3-220ENST00000561381 KBTBD12Q3ZCT8 623 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 HIST2H2AA3Q6FI13 130 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 MED27Q6P2C8 311 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 RTL4Q6ZR62 310 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 SLC22A16Q86VW1 577 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 LAS2Q8IYD9 372 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 PPM1NQ8N819 430 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 OR7G3Q8NG95 312 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 OR8K3Q8NH51 312 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 ASB5Q8WWX0 329 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 PPWD1Q96BP3 646 aaKnown RBP10.76□□□□□ -0.69
USP3-220ENST00000561381 SENP5Q96HI0 755 aaPredicted RBP10.76□□□□□ -0.69
USP3-220ENST00000561381 ATOH8Q96SQ7 321 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 FAM173AQ9BQD7 235 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 ROGDIQ9GZN7 287 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 IGSF5Q9NSI5 407 aa10.76□□□□□ -0.69
USP3-220ENST00000561381 ATP6AP2A0A1C7CYW4 349 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 FAM187AA6NFU0 413 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 EIF3HO15372 352 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP3-220ENST00000561381 ATP6AP2O75787 350 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 SCELO95171 688 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 MTHFD2P13995 350 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 SPRP35270 261 aaPredicted RBP10.75□□□□□ -0.69
USP3-220ENST00000561381 PIGAP37287 484 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 ILF2Q12905 390 aaKnown RBP10.75□□□□□ -0.69
USP3-220ENST00000561381 DDX39BQ13838 428 aaKnown RBP10.75□□□□□ -0.69
USP3-220ENST00000561381 SLMAPQ14BN4 828 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 TESK1Q15569 626 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 AP5B1Q2VPB7 878 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 TMEM35AQ53FP2 167 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 PIGGQ5H8A4 983 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 GRTP1Q5TC63 336 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 KHDRBS2Q5VWX1 349 aaKnown RBP10.75□□□□□ -0.69
USP3-220ENST00000561381 C18orf63Q68DL7 685 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 OR4C11Q6IEV9 310 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 ZNF585AQ6P3V2 769 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 PAOXQ6QHF9 649 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 GK5Q6ZS86 529 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 FAM47EQ6ZV65 393 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 RAPH1Q70E73 1250 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 CYS1Q717R9 158 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 TRILQ7L0X0 811 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 CDH24Q86UP0 819 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 C9orf40Q8IXQ3 194 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 FAM109AQ8N4B1 249 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 GOLM1Q8NBJ4 401 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 SRFBP1Q8NEF9 429 aaKnown RBP10.75□□□□□ -0.69
USP3-220ENST00000561381 SPATA4Q8NEY3 305 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 OR5L2Q8NGL0 311 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 OR5M3Q8NGP4 307 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 HUS1BQ8NHY5 278 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 STAG3L4Q8TBR4 150 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 UBTD2Q8WUN7 234 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 NXNL1Q96CM4 212 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 SMC6Q96SB8 1091 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 PHACTR1Q9C0D0 580 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 IL1RL2Q9HB29 575 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 TUBA8Q9NY65 449 aaPredicted RBP10.75□□□□□ -0.69
USP3-220ENST00000561381 NUDT4Q9NZJ9 180 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 OPTCQ9UBM4 332 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 RNF14Q9UBS8 474 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 ATG4BQ9Y4P1 393 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 FAM215AQ9Y5M1 114 aa10.75□□□□□ -0.69
USP3-220ENST00000561381 MED13LQ71F56 2210 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 SYNDIG1LA6NDD5 238 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 LRRC14BA6NHZ5 514 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 K7EPI3 171 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 PLPP1O14494 284 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 KERAO60938 352 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 NADKO95544 446 aaPredicted RBP10.74□□□□□ -0.69
USP3-220ENST00000561381 IGHG3P01860 377 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 IGKV3-11P04433 115 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 P04436 131 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 LTA4HP09960 611 aaKnown RBP10.74□□□□□ -0.69
USP3-220ENST00000561381 CAPN3P20807 821 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 ENDOUP21128 410 aaKnown RBP10.74□□□□□ -0.69
USP3-220ENST00000561381 ACVR2AP27037 513 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 MSX1P28360 303 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 STT3AP46977 705 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 PLTPP55058 493 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 HNRNPH2P55795 449 aaKnown RBP10.74□□□□□ -0.69
USP3-220ENST00000561381 IGLV3-21P80748 117 aaPredicted RBP10.74□□□□□ -0.69
USP3-220ENST00000561381 IRF9Q00978 393 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 FOLH1Q04609 750 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 PCDH1Q08174 1060 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 ZNF791Q3KP31 576 aaPredicted RBP10.74□□□□□ -0.69
USP3-220ENST00000561381 DEPDC1Q5TB30 811 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 NDUFAF5Q5TEU4 345 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 RTL6Q6ICC9 239 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 GRHL2Q6ISB3 625 aa10.74□□□□□ -0.69
USP3-220ENST00000561381 OPN5Q6U736 354 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms