RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 CDK4P11802 303 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 PORP16435 677 aaPredicted RBP9.72□□□□□ -0.85
USP3-219ENST00000561326 GPX2P18283 190 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 EFNA1P20827 205 aaPredicted RBP9.72□□□□□ -0.85
USP3-219ENST00000561326 IL10P22301 178 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 PTPN6P29350 595 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 NBL1P41271 181 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 CDKN2CP42773 168 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 GSK3BP49841 420 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 XKP51811 444 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 NCBP2P52298 156 aaKnown RBP eCLIP9.72□□□□□ -0.851e-6■■■■□ 23.8
USP3-219ENST00000561326 MTPNP58546 118 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 ACTR3P61158 418 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 ABHD18Q0P651 414 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 RIPK1Q13546 671 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 FLOT2Q14254 428 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 IL11RAQ14626 422 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 KPNB1Q14974 876 aaKnown RBP9.72□□□□□ -0.85
USP3-219ENST00000561326 SPDYE7PQ495Y7 208 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 RABL3Q5HYI8 236 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 TTLL10Q6ZVT0 673 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 PRSS41Q7RTY9 318 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 TMPRSS9Q7Z410 1059 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 DHFR2Q86XF0 187 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 PROSER1Q86XN7 944 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 PDSS2Q86YH6 399 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 MMP21Q8N119 569 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 AGBL5Q8NDL9 886 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 OR1L3Q8NH93 324 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 JADE3Q92613 823 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 POP5Q969H6 163 aaKnown RBP9.72□□□□□ -0.85
USP3-219ENST00000561326 ZNF501Q96CX3 271 aaPredicted RBP9.72□□□□□ -0.85
USP3-219ENST00000561326 C10orf90Q96M02 699 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 AMDHD1Q96NU7 426 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 OR6C1Q96RD1 312 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 DPH2Q9BQC3 489 aaPredicted RBP9.72□□□□□ -0.85
USP3-219ENST00000561326 CPPED1Q9BRF8 314 aaPredicted RBP9.72□□□□□ -0.85
USP3-219ENST00000561326 SLC35A5Q9BS91 424 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 SPATA9Q9BWV2 254 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 STRADBQ9C0K7 418 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 DENND2DQ9H6A0 471 aaPredicted RBP9.72□□□□□ -0.85
USP3-219ENST00000561326 TPT1P8Q9HAU6 139 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 C3orf14Q9HBI5 128 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 SLC25A37Q9NYZ2 338 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 SNX8Q9Y5X2 465 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 GMEB1Q9Y692 573 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 OTOGLQ3ZCN5 2332 aa9.72□□□□□ -0.85
USP3-219ENST00000561326 NUP210LQ5VU65 1888 aa9.71□□□□□ -0.85
USP3-219ENST00000561326 ELOVL7A1L3X0 281 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 ZNF749O43361 778 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 MGRN1O60291 552 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 FKBP6O75344 327 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 BCAS2O75934 225 aaPredicted RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 NTRK1P04629 796 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 CTSBP07858 339 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 HOXB9P17482 250 aaPredicted RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 MSX2P35548 267 aaPredicted RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 SOAT1P35610 550 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 FEN1P39748 380 aaKnown RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 MAGEA8P43361 318 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 CCT3P49368 545 aaKnown RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 ANXA11P50995 505 aaKnown RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 OLR1P78380 273 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 SHC2P98077 582 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 ZFP36L1Q07352 338 aaKnown RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 VAC14Q08AM6 782 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 HSPB3Q12988 150 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 FADDQ13158 208 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 CYP51A1Q16850 503 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 PRSS53Q2L4Q9 553 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 MPEG1Q2M385 716 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 ERICH5Q6P6B1 374 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 ANGPTL8Q6UXH0 198 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 RBM44Q6ZP01 1051 aaKnown RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 ZNF551Q7Z340 670 aaPredicted RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 SERPINA11Q86U17 422 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 PPP1R3BQ86XI6 285 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 SLITRK4Q8IW52 837 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 MSRB3Q8IXL7 192 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 ZNF595Q8IYB9 648 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 CCDC116Q8IYX3 515 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 LRRC25Q8N386 305 aaPredicted RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 RCBTB1Q8NDN9 531 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 OR2T12Q8NG77 320 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 OR51Q1Q8NH59 317 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 OR10A6Q8NH74 314 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 PSMA8Q8TAA3 256 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 ZFP90Q8TF47 636 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 WDR60Q8WVS4 1066 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 COL26A1Q96A83 441 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 MOAP1Q96BY2 351 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 TBC1D20Q96BZ9 403 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 CNRIP1Q96F85 164 aaPredicted RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 ZNF583Q96ND8 569 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 YIPF2Q9BWQ6 316 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 GLIPR2Q9H4G4 154 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 KAT8Q9H7Z6 458 aaKnown RBP9.71□□□□□ -0.86
USP3-219ENST00000561326 DCLRE1BQ9H816 532 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 ZNF304Q9HCX3 659 aa9.71□□□□□ -0.86
USP3-219ENST00000561326 SLC6A13Q9NSD5 602 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms