RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 PUM1Q14671 1186 aaKnown RBP eCLIP15.49■□□□□ 0.07
SHMT2-231ENST00000557433 QPRTQ15274 297 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 DUSP6Q16828 381 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 C3orf38Q5JPI3 329 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 SAXO2Q658L1 398 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 ADNP2Q6IQ32 1131 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 OTOP2Q7RTS6 562 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 OR5P2Q8WZ92 322 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 ZC3HAV1LQ96H79 300 aaKnown RBP15.49■□□□□ 0.07
SHMT2-231ENST00000557433 KCTD7Q96MP8 289 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 SGPP1Q9BX95 441 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 EPHX3Q9H6B9 360 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 ANKRA2Q9H9E1 313 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 MRPL17Q9NRX2 175 aaKnown RBP15.49■□□□□ 0.07
SHMT2-231ENST00000557433 MRPS18AQ9NVS2 196 aaKnown RBP15.49■□□□□ 0.07
SHMT2-231ENST00000557433 AHSPQ9NZD4 102 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 DNAJC27Q9NZQ0 273 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 CLEC2DQ9UHP7 191 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 CD84Q9UIB8 345 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 CLEC4EQ9ULY5 219 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 CASP8AP2Q9UKL3 1982 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 B4DXG7 233 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 TNFRSF10AO00220 468 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 POLR1CO15160 346 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-231ENST00000557433 TSPAN6O43657 245 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 OR10H3O60404 316 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 TMCC2O75069 709 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 HLA-DQB1P01920 261 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 GAAP10253 952 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 ACADMP11310 421 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 STK19P49842 368 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-231ENST00000557433 LIM2P55344 173 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 DMPKQ09013 629 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 DUSP7Q16829 419 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 ZMAT1Q5H9K5 638 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 LCN1P1Q5VSP4 162 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 TXNDC8Q6A555 127 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 ZNF557Q8N988 423 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-231ENST00000557433 NELL2Q99435 816 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 VN1R3Q9BXE9 311 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 NIPAL2Q9H841 368 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 IL21Q9HBE4 155 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 TRIM39Q9HCM9 518 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 NEUROD4Q9HD90 331 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 ABCB9Q9NP78 766 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 TIGARQ9NQ88 270 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 MIEF1Q9NQG6 463 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 PAQR5Q9NXK6 330 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-231ENST00000557433 CFAP97Q9P2B7 532 aa15.49■□□□□ 0.07
SHMT2-231ENST00000557433 OR2AG2A6NM03 316 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 H3BN98 237 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 SH3BGRLO75368 114 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 CSF3P09919 207 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 NR2F6P10588 404 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 SDC2P34741 201 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 CTSOP43234 321 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-231ENST00000557433 ATN1P54259 1190 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-231ENST00000557433 CASP9P55211 416 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 TBPL1P62380 186 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 PPP3R1P63098 170 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 CAMK2BQ13554 666 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 DOC2BQ14184 412 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 PLK5Q496M5 336 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 CYP27C1Q4G0S4 372 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 PGBD2Q6P3X8 592 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 USP30Q70CQ3 517 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 HSD11B1LQ7Z5J1 315 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 LAPTM4BQ86VI4 370 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 OR5AK3PQ8NH89 298 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 MRPS31Q92665 395 aaKnown RBP15.48■□□□□ 0.07
SHMT2-231ENST00000557433 TMEM169Q96HH4 297 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 DIRAS2Q96HU8 199 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 ZNF354BQ96LW1 612 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 ZNF607Q96SK3 696 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 COQ7Q99807 217 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 MIXL1Q9H2W2 232 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 ZNF334Q9HCZ1 680 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-231ENST00000557433 DIABLOQ9NR28 239 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 PHF11Q9UIL8 331 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 GSTK1Q9Y2Q3 226 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 INSL5Q9Y5Q6 135 aa15.48■□□□□ 0.07
SHMT2-231ENST00000557433 A0A1W2PQL4 384 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-231ENST00000557433 TMEM129A0AVI4 362 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 TSPAN11A1L157 253 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 BNIP3LO60238 219 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 C1orf105O95561 183 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 MYCP01106 439 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-231ENST00000557433 TSPAN19P0C672 248 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 NPPBP16860 134 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 MYL12AP19105 171 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 RECQLP46063 649 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-231ENST00000557433 ARPC4P59998 168 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 MC1RQ01726 317 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 CNTN1Q12860 1018 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 SLAMF1Q13291 335 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 CCSMST1Q4G0I0 132 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 PPP2R2DQ66LE6 453 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 TCTN3Q6NUS6 607 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 MZT2BQ6NZ67 158 aa15.47■□□□□ 0.07
SHMT2-231ENST00000557433 CEACAM20Q6UY09 585 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms