RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ZNF879B4DU55 563 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 ICOSLGO75144 302 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 AP2A2O94973 939 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 C22orf31O95567 290 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 HEXAP06865 529 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 FPR1P21462 350 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 GGT2P36268 569 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 ZNF648Q5T619 568 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-226ENST00000556825 OR5M10Q6IEU7 315 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 NAPEPLDQ6IQ20 393 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 SCIMPQ6UWF3 145 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 ZNF605Q86T29 641 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 XYLT1Q86Y38 959 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 TGIF2LXQ8IUE1 241 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 NLGN2Q8NFZ4 835 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 DTD1Q8TEA8 209 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 RXFP2Q8WXD0 754 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 TMEM209Q96SK2 561 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 HBEGFQ99075 208 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 SIK2Q9H0K1 926 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 SUV39H2Q9H5I1 410 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 REEP4Q9H6H4 257 aa13.21□□□□□ -0.29
SHMT2-226ENST00000556825 LOC105369274A0A096LPK9 316 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 MYO1GB0I1T2 1018 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 RP2O75695 350 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 CRTAPO75718 401 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-226ENST00000556825 ERCC2P18074 760 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 HTR5AP47898 357 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 SUOXP51687 545 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 PURAQ00577 322 aaKnown RBP13.2□□□□□ -0.3
SHMT2-226ENST00000556825 FABP9Q0Z7S8 132 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 CCDC85BQ15834 202 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-226ENST00000556825 MAPKAPK3Q16644 382 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 SPIN4Q56A73 249 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 RAET1GQ6H3X3 334 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 OR2T5Q6IEZ7 315 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 FGD2Q7Z6J4 655 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 GPR149Q86SP6 731 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 ZDHHC21Q8IVQ6 265 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 OR4N4Q8N0Y3 316 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 ARMC10Q8N2F6 343 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 PXT1Q8NFP0 134 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 OR2T29Q8NH02 315 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 TADA1Q96BN2 335 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 PHF21BQ96EK2 531 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 PYURFQ96I23 114 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 MRPL37Q9BZE1 423 aaKnown RBP13.2□□□□□ -0.3
SHMT2-226ENST00000556825 RNF122Q9H9V4 155 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 FEM1BQ9UK73 627 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 TP53TG5Q9Y2B4 290 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 PLEKHA6Q9Y2H5 1048 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 NUBP2Q9Y5Y2 271 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 ELOVL7A1L3X0 281 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 C1orf196B1AJZ1 125 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 SERPINA3P01011 423 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 EGFP01133 1207 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 ALDOBP05062 364 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 ITGA3P26006 1051 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 EVX1P49640 407 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 GNG10P50151 68 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 PLK1P53350 603 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 RAB2AP61019 212 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 CAMK2GQ13555 558 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-226ENST00000556825 DOC2BQ14184 412 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 USP39Q53GS9 565 aaKnown RBP13.2□□□□□ -0.3
SHMT2-226ENST00000556825 AKIRIN2Q53H80 203 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 RGMBQ6NW40 437 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 OR52K1Q8NGK4 314 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 OR6X1Q8NH79 312 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 THAP6Q8TBB0 222 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 TMEM163Q8TC26 289 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 DDOQ99489 341 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 SPATA5L1Q9BVQ7 753 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 GABARAPL3Q9BY60 117 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 DUSP15Q9H1R2 295 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-226ENST00000556825 ABCG8Q9H221 673 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 NUDT15Q9NV35 164 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 TMEM45AQ9NWC5 275 aa13.2□□□□□ -0.3
SHMT2-226ENST00000556825 EIF2B4Q9UI10 523 aaKnown RBP13.2□□□□□ -0.3
SHMT2-226ENST00000556825 MICAL3Q7RTP6 2002 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 COL11A2P13942 1736 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 IGLV3-22A0A075B6J6 115 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 G3V3G9 751 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 GFRA2O00451 464 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 AZIN1O14977 448 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 TREHO43280 583 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 OIP5O43482 229 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 IFNA10P01566 189 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 CBSLP0DN79 551 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 GABRA1P14867 456 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 NFYAP23511 347 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 CBSP35520 551 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 SH3BP2P78314 561 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 MBTD1Q05BQ5 628 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ILF3Q12906 894 aaKnown RBP eCLIP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 PWP1Q13610 501 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 GTF2H3Q13889 308 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 INO80DQ53TQ3 878 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 GPRC6AQ5T6X5 926 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 DCAF8Q5TAQ9 597 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms