RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 CCDC63Q8NA47 563 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 ATAD1Q8NBU5 361 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 OR7A2PQ8NGA2 310 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 OR2T11Q8NH01 316 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 SLC26A7Q8TE54 656 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 METTL21AQ8WXB1 218 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 RIT1Q92963 219 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 ZNF501Q96CX3 271 aaPredicted RBP1.34□□□□□ -2.19
PRPF39-208ENST00000554785 FBXO17Q96EF6 278 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 C4orf45Q96LM5 186 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 AK8Q96MA6 479 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 NDNQ99608 321 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 RIMS4Q9H426 269 aaPredicted RBP1.34□□□□□ -2.19
PRPF39-208ENST00000554785 ZNF71Q9NQZ8 489 aaPredicted RBP1.34□□□□□ -2.19
PRPF39-208ENST00000554785 OR6C2Q9NZP2 312 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 HMG20BQ9P0W2 317 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 VPS18Q9P253 973 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 MAN1B1Q9UKM7 699 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 ANGPTL2Q9UKU9 493 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 GAB2Q9UQC2 676 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 CREBBPQ92793 2442 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 C2CD3Q4AC94 2353 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 UTP20O75691 2785 aaKnown RBP1.34□□□□□ -2.19
PRPF39-208ENST00000554785 ASCC3Q8N3C0 2202 aaKnown RBP1.34□□□□□ -2.19
PRPF39-208ENST00000554785 NBASA2RRP1 2371 aa1.34□□□□□ -2.19
PRPF39-208ENST00000554785 FANCIQ9NVI1 1328 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 URB1O60287 2271 aaKnown RBP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 KIF26AQ9ULI4 1882 aaPredicted RBP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 IGHV4-4A0A075B6R2 117 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TRBV5-5A0A0J9YX44 114 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 A0A0U1RQK1 487 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 ZNF320A2RRD8 509 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 A4D1N5 150 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 MSGN1A6NI15 193 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 C17orf105B2RV13 164 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM150CB9EJG8 249 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 HHLA1C9JL84 531 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 CCER2I3L3R5 266 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 CCL24O00175 119 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 ST8SIA3O43173 380 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 SLC7A4O43246 635 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 EXTL3O43909 919 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 KINO60870 393 aaKnown RBP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 PRDM1O75626 825 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 CDC123O75794 336 aaPredicted RBP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 BAG3O95817 575 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 ANKRD34CP0C6C1 535 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 SUPT20HL2P0C7V6 817 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 PATE4P0C8F1 98 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 GHRP10912 638 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 EEF2P13639 858 aaKnown RBP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 F3P13726 295 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 CAPN2P17655 700 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 BTG3Q14201 252 aaPredicted RBP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 NFE2L1Q14494 772 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 GPNMBQ14956 572 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 E2F5Q15329 346 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 C14orf177Q52M58 125 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 FFAR4Q5NUL3 377 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TCEAL6Q6IPX3 200 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 FAM166AQ6J272 317 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TTC27Q6P3X3 843 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 FUT10Q6P4F1 479 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 BTNL8Q6UX41 500 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 LINC00696Q6ZRV3 163 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 OTOAQ7RTW8 1153 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 PIWIL3Q7Z3Z3 882 aaKnown RBP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TUSC5Q8IXB3 177 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 RCOR2Q8IZ40 523 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 FAM9BQ8IZU0 186 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 SPEM1Q8N4L4 309 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TMCO5AQ8N6Q1 288 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 NIPA2Q8N8Q9 360 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM178AQ8NBL3 297 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 UXS1Q8NBZ7 420 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 VN1R2Q8NFZ6 395 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 NCOA7Q8NI08 942 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 FAM76AQ8TAV0 307 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TMEM190Q8WZ59 177 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 PIK3R3Q92569 461 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 DYRK2Q92630 601 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TAF15Q92804 592 aaKnown RBP eCLIP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TCEAL3Q969E4 200 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 CENPTQ96BT3 561 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 SGF29Q96ES7 293 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 C10orf90Q96M02 699 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 DUX3Q96PT4 197 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 CDCA3Q99618 268 aaPredicted RBP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 GPATCH1Q9BRR8 931 aaKnown RBP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 TEX13BQ9BXU2 312 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 THAP2Q9H0W7 228 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 C2orf40Q9H1Z8 148 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 ATP13A3Q9H7F0 1226 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 C2orf42Q9NWW7 574 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 HOXC10Q9NYD6 342 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 SEPT10Q9P0V9 454 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 CTNNA3Q9UI47 895 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 RUVBL2Q9Y230 463 aaKnown RBP1.34□□□□□ -2.2
PRPF39-208ENST00000554785 CELSR1Q9NYQ6 3014 aa1.34□□□□□ -2.2
PRPF39-208ENST00000554785 F5P12259 2224 aa1.34□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms