RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 PAQR6Q6TCH4 344 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 CEACAM20Q6UY09 585 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 HSDL2Q6YN16 418 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 Q6ZVL8 140 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 HSD11B1LQ7Z5J1 315 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 LILRA3Q8N6C8 439 aaPredicted RBP16.7■□□□□ 0.26
SYNE3-202ENST00000553340 APOBEC4Q8WW27 367 aaKnown RBP16.7■□□□□ 0.26
SYNE3-202ENST00000553340 PDXPQ96GD0 296 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 NELL2Q99435 816 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 EFCAB11Q9BUY7 163 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 MCOLN1Q9GZU1 580 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 ZNF334Q9HCZ1 680 aaPredicted RBP16.7■□□□□ 0.26
SYNE3-202ENST00000553340 RPRD1BQ9NQG5 326 aaKnown RBP16.7■□□□□ 0.26
SYNE3-202ENST00000553340 ATG13O75143 517 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 EFEMP2O95967 443 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 MAPK9P45984 424 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 WDR5P61964 334 aaKnown RBP16.7■□□□□ 0.26
SYNE3-202ENST00000553340 BCDIN3DQ7Z5W3 292 aaKnown RBP16.7■□□□□ 0.26
SYNE3-202ENST00000553340 UBASH3BQ8TF42 649 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 ZIC5Q96T25 663 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 SYT17Q9BSW7 474 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 CFAP97Q9P2B7 532 aa16.7■□□□□ 0.26
SYNE3-202ENST00000553340 PLEKHB1Q9UF11 243 aaPredicted RBP16.7■□□□□ 0.26
SYNE3-202ENST00000553340 HELZP42694 1942 aaKnown RBP16.7■□□□□ 0.26
SYNE3-202ENST00000553340 KLK1P06870 262 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 H1F0P07305 194 aaKnown RBP16.69■□□□□ 0.26
SYNE3-202ENST00000553340 MSL3P1P0C860 447 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 SLC9A3P48764 834 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 EPHB3P54753 998 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 TBPL1P62380 186 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 CD83Q01151 205 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 PRSS53Q2L4Q9 553 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 PYDC2Q56P42 97 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 RPS26P11Q5JNZ5 115 aaPredicted RBP16.69■□□□□ 0.26
SYNE3-202ENST00000553340 HIST2H2AA3Q6FI13 130 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 C22orf42Q6IC83 251 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 WDR53Q7Z5U6 358 aaPredicted RBP16.69■□□□□ 0.26
SYNE3-202ENST00000553340 ENKURQ8TC29 256 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 TEFMQ96QE5 360 aaKnown RBP16.69■□□□□ 0.26
SYNE3-202ENST00000553340 SLC6A16Q9GZN6 736 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 MIEF1Q9NQG6 463 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 HCN2Q9UL51 889 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 DYRK1BQ9Y463 629 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 SLC5A10A0PJK1 596 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 HEPACAM2A8MVW5 462 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 CSF2P04141 144 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 BCHEP06276 602 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 CKMP06732 381 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 ELNP15502 786 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 DGKGP49619 791 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 CTSCP53634 463 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 DCDC1P59894 354 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 GALK2Q01415 458 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 QPRTQ15274 297 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 TCTN3Q6NUS6 607 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 HTR3DQ70Z44 454 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 TRAM1L1Q8N609 369 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 CHST14Q8NCH0 376 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 ZNF480Q8WV37 535 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 KIAA1143Q96AT1 154 aaPredicted RBP16.69■□□□□ 0.26
SYNE3-202ENST00000553340 FAM83CQ9BQN1 747 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 BEX2Q9BXY8 128 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 DIMT1Q9UNQ2 313 aaKnown RBP16.69■□□□□ 0.26
SYNE3-202ENST00000553340 NINQ8N4C6 2090 aa16.69■□□□□ 0.26
SYNE3-202ENST00000553340 CXorf51AA0A1B0GTR3 108 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 PIPSLA2A3N6 862 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 FHP07954 510 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 CLEC2LP0C7M8 214 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 C1GALT1C1LP0DN25 315 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 CHRNB1P11230 501 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 CYP2A6P11509 494 aaPredicted RBP16.68■□□□□ 0.26
SYNE3-202ENST00000553340 CPEP16870 476 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 ETV3P41162 512 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 ARPC4P59998 168 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 BNC1Q01954 994 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 Q5BKY6 102 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 SAXO2Q658L1 398 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 GDPD4Q6W3E5 623 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 TRIM48Q8IWZ4 208 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 CAMKK1Q8N5S9 505 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 RASGEF1AQ8N9B8 481 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 SLC38A5Q8WUX1 472 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 JPH3Q8WXH2 748 aaPredicted RBP16.68■□□□□ 0.26
SYNE3-202ENST00000553340 TMEM203Q969S6 136 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 WDR34Q96EX3 536 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 KCTD7Q96MP8 289 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 RIOK2Q9BVS4 552 aaKnown RBP16.68■□□□□ 0.26
SYNE3-202ENST00000553340 CXorf36Q9H7Y0 433 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 TVP23BQ9NYZ1 205 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 SLC25A13Q9UJS0 675 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 POLR1CO15160 346 aaPredicted RBP16.68■□□□□ 0.26
SYNE3-202ENST00000553340 KLHL18O94889 574 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 RAB36O95755 333 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 IL3P08700 152 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 NPPBP16860 134 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 IRS1P35568 1242 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 KIR2DL3P43628 341 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 TARDBPQ13148 414 aaKnown RBP eCLIP16.68■□□□□ 0.26
SYNE3-202ENST00000553340 GPNMBQ14956 572 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 PGBD2Q6P3X8 592 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms