RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 KANK2Q63ZY3 851 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 KIAA0930Q6ICG6 404 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 CAPN13Q6MZZ7 669 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TECPR1Q7Z6L1 1165 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 LDB1Q86U70 411 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 AMIGO1Q86WK6 493 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 HIPK1Q86Z02 1210 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 LIX1LQ8IVB5 337 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 RBFAQ8N0V3 343 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 EID2Q8N6I1 236 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 FAM86B1Q8N7N1 296 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 C2CD4AQ8NCU7 369 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 OR4K2Q8NGD2 314 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TSACCQ96A04 125 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TSPAN17Q96FV3 270 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 CDKN2AIPNLQ96HQ2 116 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ITCHQ96J02 903 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 SLC30A2Q9BRI3 323 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 RHNO1Q9BSD3 238 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ZSCAN5AQ9BUG6 496 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 APOOQ9BUR5 198 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 GPR63Q9BZJ6 419 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 RIBC2Q9H4K1 309 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 CARS2Q9HA77 564 aaKnown RBP7.32□□□□□ -1.24
LIMA1-216ENST00000552909 TIGARQ9NQ88 270 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 B3GNT2Q9NY97 397 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 BTRCQ9Y297 605 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 KLHL20Q9Y2M5 609 aa7.32□□□□□ -1.24
LIMA1-216ENST00000552909 ARHGEF17Q96PE2 2063 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 LOC100506127A0A0U1RQW1 187 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 TRIM77I1YAP6 450 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 BET1O15155 118 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 FLRT2O43155 660 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 DFNA5O60443 496 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 PIAS2O75928 621 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 CDK14O94921 469 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 SOD1P00441 154 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 CSF2P04141 144 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 CYP2A6P11509 494 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 ATF4P18848 351 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 TRIM23P36406 574 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 RFX2P48378 723 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 MRPL19P49406 292 aaKnown RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 MAPK12P53778 367 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 FOXA1P55317 472 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 MTPNP58546 118 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 UFM1P61960 85 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 YPEL5P62699 121 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 PPP1R8Q12972 351 aaKnown RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 ARHGEF7Q14155 803 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 EFR3AQ14156 821 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 NKG7Q16617 165 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 RBM20Q5T481 1227 aaKnown RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 CREB3L2Q70SY1 520 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 GALNT5Q7Z7M9 940 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 SYVN1Q86TM6 617 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 PARGQ86W56 976 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 TCTE3Q8IZS6 198 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 GLB1L3Q8NCI6 653 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 BAHD1Q8TBE0 780 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 PMEPA1Q969W9 287 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 NUS1Q96E22 293 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 DTD2Q96FN9 168 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 TEX37Q96LM6 180 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 TRNT1Q96Q11 434 aaKnown RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 LYSMD1Q96S90 227 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 BEX2Q9BXY8 128 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 ALG9Q9H6U8 611 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 GORASP2Q9H8Y8 452 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 AIG1Q9NVV5 245 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 NLE1Q9NVX2 485 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 GLTPQ9NZD2 209 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 EIF3KQ9UBQ5 218 aaKnown RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 ZMAT5Q9UDW3 170 aaKnown RBP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.31□□□□□ -1.24
LIMA1-216ENST00000552909 GMPPBQ9Y5P6 360 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 IGF2RP11717 2491 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 RP1P56715 2156 aa7.31□□□□□ -1.24
LIMA1-216ENST00000552909 FAM234BA2RU67 622 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 CCDC182A6NF36 153 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 FFAR2O15552 330 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 MITFO75030 526 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 CRCPO75575 148 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 SCO1O75880 301 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 PDGFAP04085 211 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 CELA2BP08218 269 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 MYF5P13349 255 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 CYP4B1P13584 511 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 EFNA1P20827 205 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 CA5AP35218 305 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 PIK3CBP42338 1070 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ZFP36L2P47974 494 aaKnown RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF140P52738 457 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-216ENST00000552909 STC1P52823 247 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 NFKB2Q00653 900 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 IL1RL1Q01638 556 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 ACVR1Q04771 509 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 C1orf61Q13536 156 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 GBX1Q14549 363 aa7.3□□□□□ -1.24
LIMA1-216ENST00000552909 MAD2L1BPQ15013 274 aaPredicted RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms