RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 JKAMPQ9P055 326 aa11.71□□□□□ -0.53
SCAF11-208ENST00000546534 BOKQ9UMX3 212 aaPredicted RBP11.71□□□□□ -0.53
SCAF11-208ENST00000546534 DYRK1BQ9Y463 629 aa11.71□□□□□ -0.53
SCAF11-208ENST00000546534 MAD1L1Q9Y6D9 718 aa11.71□□□□□ -0.53
SCAF11-208ENST00000546534 LRIT2A6NDA9 550 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 ESPNB1AK53 854 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 C17orf105B2RV13 164 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 SMPD2O60906 423 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 ETHE1O95571 254 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 GABRB3P28472 473 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 VPS41P49754 854 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 PGGT1BP53609 377 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 PLA2G16P53816 162 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 LIM2P55344 173 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 CRYZQ08257 329 aaKnown RBP11.7□□□□□ -0.54
SCAF11-208ENST00000546534 STX4Q12846 297 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 DUSP8Q13202 625 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 MPEG1Q2M385 716 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 NSUN5P2Q63ZY6 315 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 CAPN12Q6ZSI9 719 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.7□□□□□ -0.54
SCAF11-208ENST00000546534 AGGF1Q8N302 714 aaeCLIP11.7□□□□□ -0.54
SCAF11-208ENST00000546534 RASGEF1CQ8N431 466 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 ZNF721Q8TF20 911 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 CCT6BQ92526 530 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 HSPBAP1Q96EW2 488 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 JSRP1Q96MG2 331 aaPredicted RBP11.7□□□□□ -0.54
SCAF11-208ENST00000546534 RUNDC3BQ96NL0 473 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 DACH2Q96NX9 599 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 TSPY26PQ9H489 355 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 HOMER3Q9NSC5 361 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 IARS2Q9NSE4 1012 aaKnown RBP11.7□□□□□ -0.54
SCAF11-208ENST00000546534 TRPS1Q9UHF7 1281 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 DAPP1Q9UN19 280 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 SLC22A14Q9Y267 594 aa11.7□□□□□ -0.54
SCAF11-208ENST00000546534 A0A088AWK7 358 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 TRIM64A6NGJ6 449 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 TRIM64BA6NI03 449 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 GOLGA8MH3BSY2 632 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 LDB3O75112 727 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 LRATO95237 230 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 TBX6O95947 436 aaPredicted RBP11.69□□□□□ -0.54
SCAF11-208ENST00000546534 MLNP12872 115 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 ZNF10P21506 573 aaPredicted RBP11.69□□□□□ -0.54
SCAF11-208ENST00000546534 CTSSP25774 331 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 CERS1P27544 350 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 IL2P60568 153 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 GPS1Q13098 491 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 EFTUD2Q15029 972 aaKnown RBP eCLIP11.69□□□□□ -0.54
SCAF11-208ENST00000546534 C2CD4AQ8NCU7 369 aaPredicted RBP11.69□□□□□ -0.54
SCAF11-208ENST00000546534 SMPDL3BQ92485 455 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 TRIB1Q96RU8 372 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 SERINC2Q96SA4 455 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 PIP5K1AQ99755 562 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 DESI2Q9BSY9 194 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 FAM167BQ9BTA0 163 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 IKZF3Q9UKT9 509 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 CHCHD2Q9Y6H1 151 aaPredicted RBP11.69□□□□□ -0.54
SCAF11-208ENST00000546534 KCNE2Q9Y6J6 123 aa11.69□□□□□ -0.54
SCAF11-208ENST00000546534 NCKAP5O14513 1909 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 SH3D21A4FU49 640 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 MBD3L4A6NDZ8 208 aaPredicted RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 MBD3L3A6NE82 208 aaPredicted RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 MBD3L5A6NJ08 208 aaPredicted RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 CD8B2A6NJW9 211 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 C1QAP02745 245 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 ENO2P09104 434 aaPredicted RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 C1GALT1C1LP0DN25 315 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 GDF1P27539 372 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 OPRM1P35372 400 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 MTTPP55157 894 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 ID2Q02363 134 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 TBL3Q12788 808 aaKnown RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 ADPRMQ3LIE5 342 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 VASNQ6EMK4 673 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 SBSNQ6UWP8 590 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 PRSS57Q6UWY2 283 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 TMIGD1Q6UXZ0 262 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 SLCO4C1Q6ZQN7 724 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 YTHDF3Q7Z739 585 aaKnown RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 C9orf40Q8IXQ3 194 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 PM20D2Q8IYS1 436 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 GPATCH11Q8N954 259 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 FAM13CQ8NE31 585 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 OR2L5Q8NG80 312 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 OR10G3Q8NGC4 313 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 MBD3L2Q8NHZ7 208 aaPredicted RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 NUBPLQ8TB37 319 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 SLC22A8Q8TCC7 542 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 PIGTQ969N2 578 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 ISL2Q96A47 359 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 SPACA9Q96E40 222 aaPredicted RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 RBM24Q9BX46 236 aaKnown RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 PRDM14Q9GZV8 571 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 XAB2Q9HCS7 855 aaKnown RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 CNIH4Q9P003 139 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 COPS7AQ9UBW8 275 aa11.68□□□□□ -0.54
SCAF11-208ENST00000546534 CNOT11Q9UKZ1 510 aaKnown RBP11.68□□□□□ -0.54
SCAF11-208ENST00000546534 KIAA1549Q9HCM3 1950 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms