RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 EXOSC4Q9NPD3 245 aaKnown RBP16.07■□□□□ 0.16
USP28-208ENST00000540438 EFCAB9A8MZ26 197 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 ERI3O43414 337 aaKnown RBP16.06■□□□□ 0.16
USP28-208ENST00000540438 DNAJB6O75190 326 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 ITIH1P19827 911 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 PTX3P26022 381 aaPredicted RBP16.06■□□□□ 0.16
USP28-208ENST00000540438 MAP4K2Q12851 820 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 ZNF542PQ5EBM4 170 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 DEPDC1Q5TB30 811 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 DSG4Q86SJ6 1040 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 ZNF605Q86T29 641 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 LAS2Q8IYD9 372 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 KAT2AQ92830 837 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 DPH7Q9BTV6 452 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 CENPOQ9BU64 300 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 DPP7Q9UHL4 492 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 CLEC2DQ9UHP7 191 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 ATP6V1HQ9UI12 483 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 ZFR2Q9UPR6 939 aaKnown RBP16.06■□□□□ 0.16
USP28-208ENST00000540438 SEC16AO15027 2179 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 ZNF860A6NHJ4 632 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 M0R082 166 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 GTF2E2P29084 291 aaKnown RBP16.06■□□□□ 0.16
USP28-208ENST00000540438 OLR1P78380 273 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 TIGD6Q17RP2 521 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 DHRS4L2Q6PKH6 230 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 SHFQ7M4L6 423 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 UBE3DQ7Z6J8 389 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 B3GNT7Q8NFL0 401 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 PPP1R16AQ96I34 528 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 EHD1Q9H4M9 534 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 WDR26Q9H7D7 661 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 ZNF556Q9HAH1 456 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 SACM1LQ9NTJ5 587 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 TDRD6O60522 2096 aaKnown RBP16.06■□□□□ 0.16
USP28-208ENST00000540438 PLXNA2O75051 1894 aa16.06■□□□□ 0.16
USP28-208ENST00000540438 KLHL33A6NCF5 533 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 EPOPA6NHQ4 379 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 PDPK1O15530 556 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 HOXC11O43248 304 aaPredicted RBP16.05■□□□□ 0.16
USP28-208ENST00000540438 KELP23276 732 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 BSGP35613 385 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 BUD31P41223 144 aaPredicted RBP16.05■□□□□ 0.16
USP28-208ENST00000540438 SRSF5Q13243 272 aaKnown RBP16.05■□□□□ 0.16
USP28-208ENST00000540438 MICAQ29983 383 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 ZNF761Q86XN6 746 aaPredicted RBP16.05■□□□□ 0.16
USP28-208ENST00000540438 DCUN1D3Q8IWE4 304 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 NRSN1Q8IZ57 195 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 KRT78Q8N1N4 520 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 HTRA1Q92743 480 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 RHBGQ9H310 441 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 ZCCHC3Q9NUD5 404 aaKnown RBP16.05■□□□□ 0.16
USP28-208ENST00000540438 FBXL12Q9NXK8 326 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 AP3M1Q9Y2T2 418 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 POM121BA6NF01 834 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 CLDN24A6NM45 220 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 NDUFS4O43181 175 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 CYP7B1O75881 506 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 CCT3P49368 545 aaKnown RBP16.05■□□□□ 0.16
USP28-208ENST00000540438 RUNX3Q13761 415 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 CST6Q15828 149 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 BCL7AQ4VC05 210 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 NDUFAF5Q5TEU4 345 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 PTCHD4Q6ZW05 846 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 TMEM203Q969S6 136 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 OTUB2Q96DC9 234 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 GPN2Q9H9Y4 310 aaPredicted RBP16.05■□□□□ 0.16
USP28-208ENST00000540438 MDC1Q14676 2089 aaKnown RBP16.05■□□□□ 0.16
USP28-208ENST00000540438 A0A1W2PPV9 198 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 AIREO43918 545 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 RB1P06400 928 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 HSD3B1P14060 373 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 CHMP24386 653 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 HSD3B2P26439 372 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 SOX3P41225 446 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 RFX3P48380 749 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 NCBP2P52298 156 aaKnown RBP eCLIP16.05■□□□□ 0.16
USP28-208ENST00000540438 PDGFRLQ15198 375 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 LTB4RQ15722 352 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 AGBL4Q5VU57 503 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 TMEM107Q6UX40 140 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 ANKRD13BQ86YJ7 626 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 KCT2Q8NC54 265 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 ZCCHC10Q8TBK6 192 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 LRIG1Q96JA1 1093 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 HRASLS5Q96KN8 279 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 SMAD5Q99717 465 aaKnown RBP16.05■□□□□ 0.16
USP28-208ENST00000540438 KCNS3Q9BQ31 491 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 C19orf43Q9BQ61 176 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 SEC14L3Q9UDX4 400 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 GPR52Q9Y2T5 361 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 PCDHGA2Q9Y5H1 932 aa16.05■□□□□ 0.16
USP28-208ENST00000540438 LTBP2Q14767 1821 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 A0A1W2PQU0 124 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 ZNF701M0R085 212 aaPredicted RBP16.04■□□□□ 0.16
USP28-208ENST00000540438 ZSCAN9O15535 394 aaPredicted RBP16.04■□□□□ 0.16
USP28-208ENST00000540438 IFNW1P05000 195 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 NR2F1P10589 423 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 CERS1P27544 350 aa16.04■□□□□ 0.16
USP28-208ENST00000540438 TOP3AQ13472 1001 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 214.6 ms