RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 USP53Q70EK8 1073 aa17.43■□□□□ 0.38
SFSWAP-203ENST00000535236 PXYLP1Q8TE99 480 aa17.43■□□□□ 0.38
SFSWAP-203ENST00000535236 IQCF3P0C7M6 154 aa17.43■□□□□ 0.38
SFSWAP-203ENST00000535236 HOXB9P17482 250 aaPredicted RBP17.43■□□□□ 0.38
SFSWAP-203ENST00000535236 GGT2P36268 569 aa17.43■□□□□ 0.38
SFSWAP-203ENST00000535236 NADK2Q4G0N4 442 aa17.43■□□□□ 0.38
SFSWAP-203ENST00000535236 TMEM107Q6UX40 140 aa17.43■□□□□ 0.38
SFSWAP-203ENST00000535236 DNAJA3Q96EY1 480 aa17.43■□□□□ 0.38
SFSWAP-203ENST00000535236 SMIM30A4D0T7 59 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 LRIT3Q3SXY7 679 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 ZNF517Q6ZMY9 492 aaPredicted RBP17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 OR56A3Q8NH54 315 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 SUN5Q8TC36 379 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 TRIM64BA6NI03 449 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 HSD3B1P14060 373 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 CD1DP15813 335 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 DLX2Q07687 328 aaPredicted RBP17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 RUNX3Q13761 415 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 OR52E8Q6IFG1 317 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 SLC27A4Q6P1M0 643 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 KLHDC10Q6PID8 442 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 PLXDC1Q8IUK5 500 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 FCAMRQ8WWV6 532 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 PPP1R14BQ96C90 147 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 ZNF689Q96CS4 500 aaPredicted RBP17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 MSLNLQ96KJ4 702 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 NKX2-4Q9H2Z4 354 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 FBRSL1Q9HCM7 1045 aaKnown RBP17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 FBXL3Q9UKT7 428 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 CLEC4EQ9ULY5 219 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 KCNIP3Q9Y2W7 256 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 STYXL1Q9Y6J8 313 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 BCAS2O75934 225 aaPredicted RBP17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 P04436 131 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 CD3GP09693 182 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 NTSR1P30989 418 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 ADH7P40394 386 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 HNRNPKP61978 463 aaKnown RBP eCLIP17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 SYCE2Q6PIF2 218 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 UMODL1-AS1Q8N2C9 162 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 FOXJ1Q92949 421 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 IL17FQ96PD4 163 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 SARDHQ9UL12 918 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 ZNF840PA6NDX5 716 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 FECHP22830 423 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 GSTM2P28161 218 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 LEPRP48357 1165 aaKnown RBP17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 CST6Q15828 149 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 ATG9BQ674R7 924 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 ZNF852Q6ZMS4 543 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 BOLLQ8N9W6 283 aaKnown RBP17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 TRIB2Q92519 343 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 SLC30A2Q9BRI3 323 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 KATNBL1Q9H079 304 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 SLC19A2O60779 497 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 KCNJ13O60928 360 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 MSX1P28360 303 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 GALK2Q01415 458 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 FADDQ13158 208 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 ZFAND4Q86XD8 727 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 LIX1LQ8IVB5 337 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 SLC2A13Q96QE2 648 aa17.42■□□□□ 0.38
SFSWAP-203ENST00000535236 CPNE6O95741 557 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 ACTC1P68032 377 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 ACTA1P68133 377 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 CLCA4Q14CN2 919 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 OR8J3Q8NGG0 315 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 OR52P1PQ8NH57 321 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 OR51A7Q8NH64 312 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 PROKR1Q8TCW9 393 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 PEX13Q92968 403 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 WDR6Q9NNW5 1121 aaKnown RBP17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 ZNF226Q9NYT6 803 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 FEZF1A0PJY2 475 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 ACOT7O00154 380 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 HOXD8P13378 290 aaPredicted RBP17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 PRKCAP17252 672 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 MAB21L1Q13394 359 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 TRAM1Q15629 374 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 SEC14L1Q92503 715 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 ZUFSPQ96AP4 578 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 FBXL20Q96IG2 436 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 MRGPRX2Q96LB1 330 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 F2RL3Q96RI0 385 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 ARHGAP39Q9C0H5 1083 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 TMEM168Q9H0V1 697 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 FZD3Q9NPG1 666 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 PSAT1Q9Y617 370 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 PIAS3Q9Y6X2 628 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 SNED1Q8TER0 1413 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 FAM72CH0Y354 149 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 LSM1O15116 133 aaKnown RBP17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 SOX30O94993 753 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 C6P13671 934 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 C5AR1P21730 350 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 UQCRC1P31930 480 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 OTX2P32243 289 aa17.41■□□□□ 0.38
SFSWAP-203ENST00000535236 HSD17B12Q53GQ0 312 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms