RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CCNYL2Q5T2Q4 361 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 OR52E8Q6IFG1 317 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 LGI4Q8N135 537 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 TMEM132CQ8N3T6 1108 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 SLC5A8Q8N695 610 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 APCDD1LQ8NCL9 501 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 OR14A16Q8NHC5 309 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 CHTF18Q8WVB6 975 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 MECRQ9BV79 373 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 STMN4Q9H169 189 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-208ENST00000532560 CENPHQ9H3R5 247 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 WDR41Q9HAD4 459 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 TNFRSF12AQ9NP84 129 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 TEX10Q9NXF1 929 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-208ENST00000532560 CSAG2Q9Y5P2 127 aa14.05□□□□□ -0.16
CPSF1-208ENST00000532560 DYTNA2CJ06 578 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 NPHS1O60500 1241 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 CRCPO75575 148 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 IFNA16P05015 189 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 UROSP10746 265 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 CHN1P15882 459 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 MAPK12P53778 367 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 PLIN5Q00G26 463 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 ID2Q02363 134 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 FOLH1Q04609 750 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 PLEKHN1Q494U1 663 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-208ENST00000532560 SPIN4Q56A73 249 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 ACER2Q5QJU3 275 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 CUZD1Q86UP6 607 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 EXOC3L1Q86VI1 746 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 CRLF3Q8IUI8 442 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 ARMC10Q8N2F6 343 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 KIF2BQ8N4N8 673 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 C1orf52Q8N6N3 182 aaKnown RBP14.04□□□□□ -0.16
CPSF1-208ENST00000532560 MORN4Q8NDC4 146 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 SREK1Q8WXA9 508 aaKnown RBP14.04□□□□□ -0.16
CPSF1-208ENST00000532560 HAS2Q92819 552 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 DAZLQ92904 295 aaKnown RBP14.04□□□□□ -0.16
CPSF1-208ENST00000532560 VMP1Q96GC9 406 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 ZNF354BQ96LW1 612 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 NPAS2Q99743 824 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 ILKAPQ9H0C8 392 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-208ENST00000532560 MCM8Q9UJA3 840 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 RRP15Q9Y3B9 282 aaKnown RBP14.04□□□□□ -0.16
CPSF1-208ENST00000532560 CLCA3PQ9Y6N3 262 aa14.04□□□□□ -0.16
CPSF1-208ENST00000532560 TTLL8A6PVC2 850 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 A8MUI8 341 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 J3QKU1 62 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 CDK2AP1O14519 115 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 TM9SF1O15321 606 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 GUCY1B2O75343 617 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 BPGMP07738 259 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 COX7A2P14406 83 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 SERPINB5P36952 375 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 MDH1P40925 334 aaKnown RBP14.03□□□□□ -0.16
CPSF1-208ENST00000532560 STT3AP46977 705 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 CLCN2P51788 898 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 GPR143P51810 404 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 TRA2BP62995 288 aaKnown RBP14.03□□□□□ -0.16
CPSF1-208ENST00000532560 ARG2P78540 354 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 HMGCS1Q01581 520 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 ZNF169Q14929 603 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-208ENST00000532560 TLR1Q15399 786 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 MEP1AQ16819 746 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 NDUFAF5Q5TEU4 345 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 FCRLBQ6BAA4 426 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 RNF165Q6ZSG1 346 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 TRIM46Q7Z4K8 759 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 HOMEZQ8IX15 550 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 DNAJB14Q8TBM8 379 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 PTPMT1Q8WUK0 201 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-208ENST00000532560 NCLNQ969V3 563 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 C11orf24Q96F05 449 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-208ENST00000532560 PELOQ9BRX2 385 aaKnown RBP14.03□□□□□ -0.16
CPSF1-208ENST00000532560 SLAMF7Q9NQ25 335 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 STMN3Q9NZ72 180 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 LUZP4Q9P127 313 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 ABI3Q9P2A4 366 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 ZNF223Q9UK11 482 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-208ENST00000532560 PCDHGA10Q9Y5H3 936 aa14.03□□□□□ -0.16
CPSF1-208ENST00000532560 TRBV11-1A0A0K0K1C0 115 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 MYOCOSA0A1B0GUC4 107 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 OR5H15A6NDH6 313 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 GLOD5A6NK44 160 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 C17orf105B2RV13 164 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 RSL1D1O76021 490 aaKnown RBP14.02□□□□□ -0.17
CPSF1-208ENST00000532560 GPR75O95800 540 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 DDAH2O95865 285 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 WDPCPO95876 746 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 ALOX15P16050 662 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-208ENST00000532560 SERPINB4P48594 390 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 TNFSF10P50591 281 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 ACSM2AQ08AH3 577 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 KANK2Q63ZY3 851 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 ACSM2BQ68CK6 577 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 CLEC6AQ6EIG7 209 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 GALNT18Q6P9A2 607 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 OR4N5Q8IXE1 308 aa14.02□□□□□ -0.17
CPSF1-208ENST00000532560 ST13P4Q8IZP2 240 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-208ENST00000532560 BEST3Q8N1M1 668 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms