RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GOLGA4Q13439 2230 aaKnown RBP19.83■□□□□ 0.77
VPS28-208ENST00000527797 FAM220BPB1ANY3 271 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 CYR61O00622 381 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 CDX4O14627 284 aaPredicted RBP19.83■□□□□ 0.76
VPS28-208ENST00000527797 KRT36O76013 467 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 NTRK1P04629 796 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 GP1BAP07359 652 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 ACP1P24666 158 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 MPIP34949 423 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 CHI3L1P36222 383 aaPredicted RBP19.83■□□□□ 0.76
VPS28-208ENST00000527797 GZMMP51124 257 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 ITGA1P56199 1179 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 ACY1Q03154 408 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 FXNQ16595 210 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 AAGABQ6PD74 315 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 SERPINA11Q86U17 422 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 CALHM3Q86XJ0 350 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 PROSER1Q86XN7 944 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 CLEC4FQ8N1N0 589 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 OR4K14Q8NGD5 310 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 CCDC74BQ96LY2 380 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 TRIM4Q9C037 500 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 CXorf36Q9H7Y0 433 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 FGF21Q9NSA1 209 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 SNX13Q9Y5W8 968 aa19.83■□□□□ 0.76
VPS28-208ENST00000527797 NTN3O00634 580 aaPredicted RBP19.82■□□□□ 0.76
VPS28-208ENST00000527797 ARPC2O15144 300 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 GSTA4O15217 222 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 GMNNO75496 209 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 KRT75O95678 551 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 C8orf89P0DMQ9 161 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 GPC1P35052 558 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 SOX11P35716 441 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 FEN1P39748 380 aaKnown RBP19.82■□□□□ 0.76
VPS28-208ENST00000527797 CEBPEQ15744 281 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 ANGPTL8Q6UXH0 198 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 CYP2R1Q6VVX0 501 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 SPATA24Q86W54 205 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 PSMA8Q8TAA3 256 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 PNPT1Q8TCS8 783 aaKnown RBP19.82■□□□□ 0.76
VPS28-208ENST00000527797 ZNF501Q96CX3 271 aaPredicted RBP19.82■□□□□ 0.76
VPS28-208ENST00000527797 MMABQ96EY8 250 aaPredicted RBP19.82■□□□□ 0.76
VPS28-208ENST00000527797 RAD21L1Q9H4I0 556 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 RNPEPL1Q9HAU8 725 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 MAGEL2Q9UJ55 1249 aa19.82■□□□□ 0.76
VPS28-208ENST00000527797 ELOVL7A1L3X0 281 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 H0Y3Z8 333 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 C1QCP02747 245 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 SPEM2Q0P670 501 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 TCF15Q12870 199 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 RGNQ15493 299 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 SNCBQ16143 134 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 ZNF750Q32MQ0 723 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 SPDYE7PQ495Y7 208 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 LCN8Q6JVE9 175 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 GPR155Q7Z3F1 870 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 MICU2Q8IYU8 434 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 CCDC116Q8IYX3 515 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 DTWD1Q8N5C7 304 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 OR5AK3PQ8NH89 298 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 ADAMTS18Q8TE60 1221 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 TANKQ92844 425 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 ATOH1Q92858 354 aaPredicted RBP19.81■□□□□ 0.76
VPS28-208ENST00000527797 REXO5Q96IC2 774 aaKnown RBP19.81■□□□□ 0.76
VPS28-208ENST00000527797 ZNF681Q96N22 645 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 NDC1Q9BTX1 674 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 EDEM2Q9BV94 578 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 S100A14Q9HCY8 104 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 HCN3Q9P1Z3 774 aa19.81■□□□□ 0.76
VPS28-208ENST00000527797 RNF103-CHMP3A0A140T963 221 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 H0YIG0 161 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 RNH1P13489 461 aaKnown RBP19.8■□□□□ 0.76
VPS28-208ENST00000527797 CD59P13987 128 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 NCK1P16333 377 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 GGT1P19440 569 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 ATP6V1B2P21281 511 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 CDK9P50750 372 aaKnown RBP19.8■□□□□ 0.76
VPS28-208ENST00000527797 XKP51811 444 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 ARSFP54793 590 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 AP2B1P63010 937 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 MAP7Q14244 749 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 CYP51A1Q16850 503 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 YOD1Q5VVQ6 348 aaPredicted RBP19.8■□□□□ 0.76
VPS28-208ENST00000527797 GLYATQ6IB77 296 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 TTLL10Q6ZVT0 673 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 SPPL2CQ8IUH8 684 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 C10orf111Q8N326 155 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 RCBTB1Q8NDN9 531 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 OR52N2Q8NGI0 321 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 SUN3Q8TAQ9 357 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 RSRC1Q96IZ7 334 aaKnown RBP19.8■□□□□ 0.76
VPS28-208ENST00000527797 DPH2Q9BQC3 489 aaPredicted RBP19.8■□□□□ 0.76
VPS28-208ENST00000527797 SEMA3GQ9NS98 782 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 SIRT3Q9NTG7 399 aaPredicted RBP19.8■□□□□ 0.76
VPS28-208ENST00000527797 ACSL6Q9UKU0 697 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 AQP12BA6NM10 295 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 D6RAR5 112 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 FAM227AF5H4B4 570 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 ZNF749O43361 778 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 VAC14Q08AM6 782 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms