RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 SLC25A42Q86VD7 318 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 LAX1Q8IWV1 398 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 NEK11Q8NG66 645 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 ULK4Q96C45 1275 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 ZNF560Q96MR9 790 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 FAM111AQ96PZ2 611 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 PCDHB18PQ96TA0 734 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 OCR1Q9BZK8 76 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 KRT23Q9C075 422 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 SYTL2Q9HCH5 934 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 PRR34Q9NV39 138 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.71□□□□□ -1.82
CD44-223ENST00000526553 KCNN3Q9UGI6 736 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 PILRAQ9UKJ1 303 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 TP53TG3Q9ULZ0 132 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 PLCL2Q9UPR0 1127 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 ATAD2BQ9ULI0 1458 aa3.71□□□□□ -1.82
CD44-223ENST00000526553 BAZ1AQ9NRL2 1556 aaPredicted RBP3.71□□□□□ -1.82
CD44-223ENST00000526553 SMARCA4P51532 1647 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 C2orf92A0A1B0GVN3 265 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 ARHGEF33A8MVX0 844 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 SHISA9B4DS77 424 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 SSX5O60225 188 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 CLN5O75503 358 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 DLATP10515 647 aaKnown RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 AREGP15514 252 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 CCNA2P20248 432 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 CTNNA2P26232 953 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 FEN1P39748 380 aaKnown RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 ABCE1P61221 599 aaKnown RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 SRPXP78539 464 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 MLF2Q15773 248 aaPredicted RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 TCEAL6Q6IPX3 200 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 MFSD7Q6UXD7 560 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 RBM43Q6ZSC3 357 aaKnown RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 SH2D6Q7Z4S9 175 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 CARM1Q86X55 608 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 CATSPER3Q86XQ3 398 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 MARCH9Q86YJ5 346 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 KDM8Q8N371 416 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 SIDT2Q8NBJ9 832 aaKnown RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 PRCCQ92733 491 aaPredicted RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 GGHQ92820 318 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 SLCO4A1Q96BD0 722 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 C1orf147Q96MC9 270 aaPredicted RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 KCNK16Q96T55 309 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 DDX50Q9BQ39 737 aaKnown RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 LRRC2Q9BYS8 371 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 ACPTQ9BZG2 426 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 C5orf66Q9H5L9 145 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 JPT2Q9H910 190 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 ZCCHC3Q9NUD5 404 aaKnown RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 NINJ2Q9NZG7 142 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 ACTR3BQ9P1U1 418 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 KCNK6Q9Y257 313 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 BAZ1BQ9UIG0 1483 aaKnown RBP3.7□□□□□ -1.82
CD44-223ENST00000526553 LAMC3Q9Y6N6 1575 aa3.7□□□□□ -1.82
CD44-223ENST00000526553 ARHGAP42A6NI28 874 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 TCP10L2B9ZVM9 353 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 H0YIG0 161 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 RASGRF2O14827 1237 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 INPP4BO15327 924 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 SIGLEC5O15389 551 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 REC8O95072 547 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 SLC4A1P02730 911 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 ATP4BP51164 291 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 GPC3P51654 580 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 PRELPP51888 382 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 SMSP52788 366 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 NDUFV3P56181 108 aaKnown RBP3.69□□□□□ -1.82
CD44-223ENST00000526553 HTD2P86397 168 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 PPP1R8Q12972 351 aaKnown RBP3.69□□□□□ -1.82
CD44-223ENST00000526553 GCKRQ14397 625 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 C15orf32Q32M92 178 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 CCDC40Q4G0X9 1142 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 SIGLEC15Q6ZMC9 328 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 Q6ZVQ6 151 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 ZC3H3Q8IXZ2 948 aaKnown RBP3.69□□□□□ -1.82
CD44-223ENST00000526553 THEM5Q8N1Q8 247 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 RNF149Q8NC42 400 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 SSC4DQ8WTU2 575 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 NSMCE2Q96MF7 247 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 GUCD1Q96NT3 240 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 SLC39A8Q9C0K1 460 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 DDX47Q9H0S4 455 aaKnown RBP3.69□□□□□ -1.82
CD44-223ENST00000526553 DPEP2Q9H4A9 486 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 FAM120CQ9NX05 1096 aaKnown RBP3.69□□□□□ -1.82
CD44-223ENST00000526553 TAS2R3Q9NYW6 316 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 HMGXB3Q12766 1538 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 PDS5BQ9NTI5 1447 aa3.69□□□□□ -1.82
CD44-223ENST00000526553 CFAP73A6NFT4 308 aa3.68□□□□□ -1.82
CD44-223ENST00000526553 LMO7DNF2Z398 122 aa3.68□□□□□ -1.82
CD44-223ENST00000526553 OGTO15294 1046 aa3.68□□□□□ -1.82
CD44-223ENST00000526553 ACSL4O60488 711 aa3.68□□□□□ -1.82
CD44-223ENST00000526553 GALR3O60755 368 aaPredicted RBP3.68□□□□□ -1.82
CD44-223ENST00000526553 TRIM16O95361 564 aa3.68□□□□□ -1.82
CD44-223ENST00000526553 ADORA3P0DMS8 318 aa3.68□□□□□ -1.82
CD44-223ENST00000526553 BCL3P20749 454 aa3.68□□□□□ -1.82
CD44-223ENST00000526553 CYP3A5P20815 502 aa3.68□□□□□ -1.82
CD44-223ENST00000526553 ACP1P24666 158 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms