RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 FAM187AA6NFU0 413 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 FIGNL2A6NMB9 653 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 ACOT7O00154 380 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 SH3BGRLO75368 114 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 SCELO95171 688 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 C1QAP02745 245 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 IFNA16P05015 189 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 GNAZP19086 355 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 ATP5A1P25705 553 aaKnown RBP13.14□□□□□ -0.31
CPSF1-201ENST00000526271 GGT5P36269 586 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 FOLH1Q04609 750 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 FRG1Q14331 258 aaKnown RBP13.14□□□□□ -0.31
CPSF1-201ENST00000526271 PRAMEF20Q5VT98 475 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 GK5Q6ZS86 529 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 FAM47EQ6ZV65 393 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 MAATS1Q7Z4T9 603 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 ANKMY2Q8IV38 441 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 CLYBLQ8N0X4 340 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 LRRC25Q8N386 305 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-201ENST00000526271 TNIP2Q8NFZ5 429 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 OR8K3Q8NH51 312 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 OR14A16Q8NHC5 309 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 PAQR8Q8TEZ7 354 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 ZNF473Q8WTR7 871 aaKnown RBP13.14□□□□□ -0.31
CPSF1-201ENST00000526271 PPWD1Q96BP3 646 aaKnown RBP13.14□□□□□ -0.31
CPSF1-201ENST00000526271 NTNG2Q96CW9 530 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 FAR2Q96K12 515 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 EGFL8Q99944 293 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 POLDIP3Q9BY77 421 aaKnown RBP13.14□□□□□ -0.31
CPSF1-201ENST00000526271 CAB39LQ9H9S4 337 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 PPANQ9NQ55 473 aaKnown RBP13.14□□□□□ -0.31
CPSF1-201ENST00000526271 DMRT3Q9NQL9 472 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 SACM1LQ9NTJ5 587 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 CNOT11Q9UKZ1 510 aaKnown RBP13.14□□□□□ -0.31
CPSF1-201ENST00000526271 CHCHD2Q9Y6H1 151 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-201ENST00000526271 CLCA3PQ9Y6N3 262 aa13.14□□□□□ -0.31
CPSF1-201ENST00000526271 MED12LQ86YW9 2145 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 TRGV5A0A0B4J1U4 118 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 A0A1W2PS29 197 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 CXorf49A8MYA2 514 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-201ENST00000526271 RAD51CO43502 376 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 WDR1O75083 606 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 CEACAM8P31997 349 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-201ENST00000526271 HSPA7P48741 367 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 MAN2A2P49641 1150 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 SLC10A1Q14973 349 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 PPP1R7Q15435 360 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 MPEG1Q2M385 716 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 SLC25A35Q3KQZ1 300 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 RIPPLY2Q5TAB7 128 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 FNDC7Q5VTL7 733 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 PAOXQ6QHF9 649 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 WDR53Q7Z5U6 358 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-201ENST00000526271 ULK2Q8IYT8 1036 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 NKAPQ8N5F7 415 aaKnown RBP13.13□□□□□ -0.31
CPSF1-201ENST00000526271 ACOT4Q8N9L9 421 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 NOA1Q8NC60 698 aaKnown RBP13.13□□□□□ -0.31
CPSF1-201ENST00000526271 WFDC11Q8NEX6 87 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 SGCZQ96LD1 299 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 NAT9Q9BTE0 207 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 ZNF717Q9BY31 904 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-201ENST00000526271 CLEC4MQ9H2X3 399 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-201ENST00000526271 EHD1Q9H4M9 534 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 LYRM4Q9HD34 91 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 ASIC3Q9UHC3 531 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 ACAD8Q9UKU7 415 aa13.13□□□□□ -0.31
CPSF1-201ENST00000526271 MTO1Q9Y2Z2 717 aaKnown RBP13.13□□□□□ -0.31
CPSF1-201ENST00000526271 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.13□□□□□ -0.31
CPSF1-201ENST00000526271 A6NNC1 897 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 SYT5O00445 386 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 PHGDHO43175 533 aaKnown RBP13.12□□□□□ -0.31
CPSF1-201ENST00000526271 HCN1O60741 890 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 SOX18P35713 384 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 HNMTP50135 292 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 ZNF136P52737 540 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 GLE1Q53GS7 698 aaKnown RBP13.12□□□□□ -0.31
CPSF1-201ENST00000526271 C18orf63Q68DL7 685 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 BICRALQ6AI39 1079 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 TRIM40Q6P9F5 258 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 ADAMTSL2Q86TH1 951 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 TTLQ8NG68 377 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 OR10G3Q8NGC4 313 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 NUBPLQ8TB37 319 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 DAZLQ92904 295 aaKnown RBP13.12□□□□□ -0.31
CPSF1-201ENST00000526271 SENP5Q96HI0 755 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-201ENST00000526271 VPS39Q96JC1 886 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 ERP44Q9BS26 406 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 LRRC1Q9BTT6 524 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 DERL2Q9GZP9 239 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 ALKBH4Q9NXW9 302 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 GPRC5BQ9NZH0 403 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 CTNNAL1Q9UBT7 734 aa13.12□□□□□ -0.31
CPSF1-201ENST00000526271 PTBP2Q9UKA9 531 aaKnown RBP13.12□□□□□ -0.31
CPSF1-201ENST00000526271 E7ESA3 106 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 SAP18O00422 153 aaKnown RBP13.11□□□□□ -0.31
CPSF1-201ENST00000526271 H2AFYO75367 372 aaKnown RBP13.11□□□□□ -0.31
CPSF1-201ENST00000526271 ATE1O95260 518 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 CD1DP15813 335 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 GSTM2P28161 218 aa13.11□□□□□ -0.31
CPSF1-201ENST00000526271 KIR2DL3P43628 341 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms